Co-expression analysis

Gene ID	PtpAffx.99434.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g11880: AGL14 (agamous-like 14) (HF=6e-31)
Module size	6 genes
NF	0.36
%ile	62.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.88	PtpAffx.99434.1.S1_at	CV245843	hypothetical protein	-	6e-31	At4g11880	AGL14 (agamous-like 14)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.90	PtpAffx.208176.1.S1_at	pmrna16267	hypothetical protein	-	2e-4	At4g14615	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.93	PtpAffx.217731.1.S1_at	pmrna33111	hypothetical protein	-	2e-11	At1g78650	POLD3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.93	Ptp.1834.1.A1_at	CV236415	hypothetical protein	-	3e-3	At1g25290	ATRBL10 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.89	PtpAffx.4470.9.S1_at	CV262608	-	-	2e-12	At1g15270	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.88	PtpAffx.101857.1.A1_at	CV248457	-	-	2e-42	Atcg01010	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.1	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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