Co-expression analysis

Gene ID	PtpAffx.99162.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g17870: cold-shock DNA-binding family protein (HF=1e+0)
Module size	6 genes
NF	0.50
%ile	80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.91	PtpAffx.99162.1.S1_at	CV279989	hypothetical protein	-	1e+0	At2g17870	cold-shock DNA-binding family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.91	PtpAffx.158132.1.A1_at	CV282478	hypothetical protein	-	3e-12	At3g43670	copper amine oxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.92	PtpAffx.225478.1.S1_at	pmrna44846	hypothetical protein	-	8e-10	At1g29720	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.91	PtpAffx.219046.1.S1_s_at	pmrna34844	cytochrome P450 /// cytochrome P450 /// cytochrome P450	-	9e-2	At5g60530	late embryogenesis abundant protein-related / LEA protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.90	PtpAffx.159492.1.A1_at	CV277474	-	-	1e-2	At3g52550	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.91	PtpAffx.210950.1.S1_at	pmrna21514	cationic amino acid transporter	-	7e-14	At4g21120	AAT1 (AMINO ACID TRANSPORTER 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.1	98.1	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

A co-expression module including the grape gene, 1618255_at, orthologous to the query gene, PtpAffx.99162.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.7	1618255_at	At2g17870	-	-	1e+0	At4g26290	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	1622373_at	At2g17870	-	-	4e-1	At4g25410	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.45	64.6	1615057_at	At2g17870	-	-	1e-1	At4g12560	F-box family protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	1619675_at	At2g17870	-	-	5e-18	At5g16715	EMB2247 (embryo defective 2247)	O.I.	H.G.	S.X.	Please select
0.42	60.1	1619332_at	At2g17870	hypothetical protein LOC100257476	-	1e+0	Atmg00450	-	O.I.	H.G.	S.X.	Please select
0.40	57.7	1622852_at	At2g17870	-	-	4e+0	At5g06790	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1620479_at	At2g17870	-	-	2e-13	At2g29210	splicing factor PWI domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1615501_at	At2g17870	-	-	4e+0	At3g11660	NHL1	O.I.	H.G.	S.X.	Please select
0.39	54.9	1620646_at	At2g17870	hypothetical protein LOC100267710	-	1e-3	At2g18465	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	1606613_s_at	At2g17870	-	-	7e-1	At3g50980	XERO1 (DEHYDRIN XERO 1)	O.I.	H.G.	S.X.	Please select
0.37	51.7	1607979_at	At2g17870	hypothetical protein LOC100240913	-	5e-3	At2g19130	S-locus lectin protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	1619622_at	At2g17870	-	-	1e-22	At4g13590	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1613944_at	At2g17870	-	-	3e-1	At1g64405	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	1613609_at	At2g17870	-	-	1e+0	At1g11230	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	1618795_at	At2g17870	-	-	3e+0	At4g16447	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	1613984_at	At2g17870	hypothetical protein LOC100243930	-	7e-1	At2g22155	-	O.I.	H.G.	S.X.	Please select
0.32	43.1	1612421_at	At2g17870	hypothetical protein LOC100262002	-	4e+0	At5g13080	WRKY75	O.I.	H.G.	S.X.	Please select
0.31	41.3	1609860_at	At2g17870	-	-	7e-3	At3g61900	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	1617652_s_at	At2g17870	hypothetical protein LOC100249964	-	3e-2	At3g63310	glutamate binding	O.I.	H.G.	S.X.	Please select
0.29	37.7	1621367_at	At2g17870	-	-	1e+0	At2g29440	ATGSTU6 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 6)	O.I.	H.G.	S.X.	Please select
0.29	37.7	1607820_at	At2g17870	-	-	6e+0	At3g47836	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	1612423_at	At2g17870	hypothetical protein LOC100241344	-	1e-11	At5g22770	alpha-ADR (alpha-adaptin)	O.I.	H.G.	S.X.	Please select
0.28	37.7	1620741_at	At2g17870	hypothetical protein LOC100243299	-	2e-2	At5g58270	STA1 (STARIK 1)	O.I.	H.G.	S.X.	Please select
0.27	34.0	1613771_at	At2g17870	-	-	1e+0	At2g46000	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	1612289_at	At2g17870	hypothetical protein LOC100267301	-	1e-1	At2g11773	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	1614056_at	At2g17870	-	-	6e-2	At5g28090	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	1609019_at	At2g17870	similar to predicted protein	-	2e-1	At3g61250	AtMYB17 (myb domain protein 17)	O.I.	H.G.	S.X.	Please select
0.26	32.0	1617776_at	At2g17870	-	-	1e+0	At5g23440	FTRA1 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 1)	O.I.	H.G.	S.X.	Please select
0.26	32.0	1612952_at	At2g17870	hypothetical protein LOC100251831	-	2e-1	At3g26390	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	1620998_at	At2g17870	-	-	6e+0	At5g23200	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	1609314_at	At2g17870	hypothetical protein LOC100266108	-	4e+0	At3g04970	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	1615003_s_at	At2g17870	hypothetical protein LOC100248446	-	9e-27	At1g51650	ATP synthase epsilon chain, mitochondrial	O.I.	H.G.	S.X.	Please select
0.23	27.5	1613227_at	At2g17870	hypothetical protein LOC100247606	-	3e+0	At5g62575	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	1616886_at	At2g17870	-	-	1e+0	At1g75630	AVA-P4	O.I.	H.G.	S.X.	Please select
0.22	25.6	1610711_s_at	At2g17870	-	-	4e+0	At4g28085	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1619679_at	At2g17870	-	-	1e+0	At3g15690	biotin carboxyl carrier protein of acetyl-CoA carboxylase-related	O.I.	H.G.	S.X.	Please select
0.20	22.4	1607337_s_at	At2g17870	hypothetical protein LOC100259812	-	1e-13	At1g76700	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1614465_at	At2g17870	hypothetical protein LOC100242401	-	1e-3	At3g46610	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1614257_at	At2g17870	hypothetical protein LOC100250970	-	4e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.	Please select
0.19	20.9	1620814_at	At2g17870	-	-	1e+0	At3g21175	ZML1 (ZIM-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.18	19.4	1613142_at	At2g17870	-	-	1e+0	At5g15930	PAM1 (plant adhesion molecule 1)	O.I.	H.G.	S.X.	Please select
0.17	18.2	1616284_at	At2g17870	hypothetical protein LOC100250368	-	1e-44	At5g03430	phosphoadenosine phosphosulfate (PAPS) reductase family protein	O.I.	H.G.	S.X.	Please select
0.14	14.4	1618873_at	At2g17870	hypothetical protein LOC100264953	-	1e+0	At3g05685	-	O.I.	H.G.	S.X.	Please select
0.14	14.4	1606648_at	At2g17870	hypothetical protein LOC100257724	-	6e-37	At5g20060	phospholipase/carboxylesterase family protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	1616397_at	At2g17870	hypothetical protein LOC100251434	-	7e-14	At5g40980	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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