Co-expression analysis

Gene ID PtpAffx.99162.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g17870: cold-shock DNA-binding family protein (HF=1e+0)
Module size 6 genes
NF 0.50
%ile 80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7393.60.91PtpAffx.99162.1.S1_atCV279989hypothetical protein-1e+0At2g17870cold-shock DNA-binding family proteinO.I.H.G.S.X.
0.6791.10.91PtpAffx.158132.1.A1_atCV282478hypothetical protein-3e-12At3g43670copper amine oxidase, putativeO.I.H.G.S.X.
0.6187.00.92PtpAffx.225478.1.S1_atpmrna44846hypothetical protein-8e-10At1g29720protein kinase family proteinO.I.H.G.S.X.
0.5078.60.91PtpAffx.219046.1.S1_s_atpmrna34844cytochrome P450 /// cytochrome P450 /// cytochrome P450-9e-2At5g60530late embryogenesis abundant protein-related / LEA protein-relatedO.I.H.G.S.X.
0.3863.70.90PtpAffx.159492.1.A1_atCV277474--1e-2At3g52550-O.I.H.G.S.X.
0.2441.80.91PtpAffx.210950.1.S1_atpmrna21514cationic amino acid transporter-7e-14At4g21120AAT1 (AMINO ACID TRANSPORTER 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.198.1GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.892.1GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.490.4GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.088.0GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1618255_at, orthologous to the query gene, PtpAffx.99162.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9699.71618255_atAt2g17870--1e+0At4g26290unknown proteinO.I.H.G.S.X.
0.4767.71622373_atAt2g17870--4e-1At4g25410DNA binding / transcription factorO.I.H.G.S.X.
0.4564.61615057_atAt2g17870--1e-1At4g12560F-box family proteinO.I.H.G.S.X.
0.4361.51619675_atAt2g17870--5e-18At5g16715EMB2247 (embryo defective 2247)O.I.H.G.S.X.
0.4260.11619332_atAt2g17870hypothetical protein LOC100257476-1e+0Atmg00450-O.I.H.G.S.X.
0.4057.71622852_atAt2g17870--4e+0At5g06790unknown proteinO.I.H.G.S.X.
0.4057.71620479_atAt2g17870--2e-13At2g29210splicing factor PWI domain-containing proteinO.I.H.G.S.X.
0.4057.71615501_atAt2g17870--4e+0At3g11660NHL1O.I.H.G.S.X.
0.3954.91620646_atAt2g17870hypothetical protein LOC100267710-1e-3At2g18465DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.3853.61606613_s_atAt2g17870--7e-1At3g50980XERO1 (DEHYDRIN XERO 1)O.I.H.G.S.X.
0.3751.71607979_atAt2g17870hypothetical protein LOC100240913-5e-3At2g19130S-locus lectin protein kinase family proteinO.I.H.G.S.X.
0.3650.71619622_atAt2g17870--1e-22At4g13590unknown proteinO.I.H.G.S.X.
0.3345.71613944_atAt2g17870--3e-1At1g64405unknown proteinO.I.H.G.S.X.
0.3243.11613609_atAt2g17870--1e+0At1g11230unknown proteinO.I.H.G.S.X.
0.3243.11618795_atAt2g17870--3e+0At4g16447unknown proteinO.I.H.G.S.X.
0.3243.11613984_atAt2g17870hypothetical protein LOC100243930-7e-1At2g22155-O.I.H.G.S.X.
0.3243.11612421_atAt2g17870hypothetical protein LOC100262002-4e+0At5g13080WRKY75O.I.H.G.S.X.
0.3141.31609860_atAt2g17870--7e-3At3g61900auxin-responsive family proteinO.I.H.G.S.X.
0.3141.31617652_s_atAt2g17870hypothetical protein LOC100249964-3e-2At3g63310glutamate bindingO.I.H.G.S.X.
0.2937.71621367_atAt2g17870--1e+0At2g29440ATGSTU6 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 6)O.I.H.G.S.X.
0.2937.71607820_atAt2g17870--6e+0At3g47836unknown proteinO.I.H.G.S.X.
0.2837.71612423_atAt2g17870hypothetical protein LOC100241344-1e-11At5g22770alpha-ADR (alpha-adaptin)O.I.H.G.S.X.
0.2837.71620741_atAt2g17870hypothetical protein LOC100243299-2e-2At5g58270STA1 (STARIK 1)O.I.H.G.S.X.
0.2734.01613771_atAt2g17870--1e+0At2g46000unknown proteinO.I.H.G.S.X.
0.2734.01612289_atAt2g17870hypothetical protein LOC100267301-1e-1At2g11773unknown proteinO.I.H.G.S.X.
0.2632.01614056_atAt2g17870--6e-2At5g28090unknown proteinO.I.H.G.S.X.
0.2632.01609019_atAt2g17870similar to predicted protein-2e-1At3g61250AtMYB17 (myb domain protein 17)O.I.H.G.S.X.
0.2632.01617776_atAt2g17870--1e+0At5g23440FTRA1 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 1)O.I.H.G.S.X.
0.2632.01612952_atAt2g17870hypothetical protein LOC100251831-2e-1At3g26390unknown proteinO.I.H.G.S.X.
0.2530.51620998_atAt2g17870--6e+0At5g23200unknown proteinO.I.H.G.S.X.
0.2530.51609314_atAt2g17870hypothetical protein LOC100266108-4e+0At3g04970zinc finger (DHHC type) family proteinO.I.H.G.S.X.
0.2428.71615003_s_atAt2g17870hypothetical protein LOC100248446-9e-27At1g51650ATP synthase epsilon chain, mitochondrialO.I.H.G.S.X.
0.2327.51613227_atAt2g17870hypothetical protein LOC100247606-3e+0At5g62575unknown proteinO.I.H.G.S.X.
0.2225.61616886_atAt2g17870--1e+0At1g75630AVA-P4O.I.H.G.S.X.
0.2225.61610711_s_atAt2g17870--4e+0At4g28085unknown proteinO.I.H.G.S.X.
0.2022.41619679_atAt2g17870--1e+0At3g15690biotin carboxyl carrier protein of acetyl-CoA carboxylase-relatedO.I.H.G.S.X.
0.2022.41607337_s_atAt2g17870hypothetical protein LOC100259812-1e-13At1g76700DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.2022.41614465_atAt2g17870hypothetical protein LOC100242401-1e-3At3g46610pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.2022.41614257_atAt2g17870hypothetical protein LOC100250970-4e-1At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)O.I.H.G.S.X.
0.1920.91620814_atAt2g17870--1e+0At3g21175ZML1 (ZIM-LIKE 1)O.I.H.G.S.X.
0.1819.41613142_atAt2g17870--1e+0At5g15930PAM1 (plant adhesion molecule 1)O.I.H.G.S.X.
0.1718.21616284_atAt2g17870hypothetical protein LOC100250368-1e-44At5g03430phosphoadenosine phosphosulfate (PAPS) reductase family proteinO.I.H.G.S.X.
0.1414.41618873_atAt2g17870hypothetical protein LOC100264953-1e+0At3g05685-O.I.H.G.S.X.
0.1414.41606648_atAt2g17870hypothetical protein LOC100257724-6e-37At5g20060phospholipase/carboxylesterase family proteinO.I.H.G.S.X.
0.1313.31616397_atAt2g17870hypothetical protein LOC100251434-7e-14At5g40980unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



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