Co-expression analysis

Gene ID PtpAffx.99162.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g17870: cold-shock DNA-binding family protein (HF=1e+0)
Module size 6 genes
NF 0.50
%ile 80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7393.60.91PtpAffx.99162.1.S1_atCV279989hypothetical protein-1e+0At2g17870cold-shock DNA-binding family proteinO.I.H.G.S.X.
0.6791.10.91PtpAffx.158132.1.A1_atCV282478hypothetical protein-3e-12At3g43670copper amine oxidase, putativeO.I.H.G.S.X.
0.6187.00.92PtpAffx.225478.1.S1_atpmrna44846hypothetical protein-8e-10At1g29720protein kinase family proteinO.I.H.G.S.X.
0.5078.60.91PtpAffx.219046.1.S1_s_atpmrna34844cytochrome P450 /// cytochrome P450 /// cytochrome P450-9e-2At5g60530late embryogenesis abundant protein-related / LEA protein-relatedO.I.H.G.S.X.
0.3863.70.90PtpAffx.159492.1.A1_atCV277474--1e-2At3g52550-O.I.H.G.S.X.
0.2441.80.91PtpAffx.210950.1.S1_atpmrna21514cationic amino acid transporter-7e-14At4g21120AAT1 (AMINO ACID TRANSPORTER 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.198.1GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.892.1GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.490.4GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.088.0GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os04g0534100, orthologous to the query gene, PtpAffx.99162.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6987.9Os04g0534100At2g17870-Arabidopsis thaliana protein of unknown functionDUF821 family protein1e-12At1g63420-O.I.H.G.S.X.
0.5371.3Os05g0247900At2g17870-SNF2-related domain containing protein1e-7At1g03750SWI2 (SWITCH 2)O.I.H.G.S.X.
0.4964.4Os10g0518900At2g17870-DNA repair protein rad10 family protein2e-1At4g01050hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.4863.7Os07g0120700At2g17870-ARM repeat fold domain containing protein3e-1At1g51600TIFY2AO.I.H.G.S.X.
0.4458.1Os09g0570600At2g17870-PAP/25A core domain containing protein1e+0At2g41860CPK14O.I.H.G.S.X.
0.4253.9Os11g0101200At2g17870-CCT domain containing protein3e-1At3g11100transcription factorO.I.H.G.S.X.
0.4051.1Os03g0752200At2g17870-AtSPO11-12e-6At3g13170ATSPO11-1O.I.H.G.S.X.
0.3948.3Os01g0324200At2g17870-SWIM Zn-finger domain containing protein2e+0At1g71200DNA binding / transcription factorO.I.H.G.S.X.
0.3745.0Os11g0129800At2g17870-Hypothetical protein8e-1At5g14690unknown proteinO.I.H.G.S.X.
0.3745.0Os10g0484400At2g17870-Ribosomal protein L18P/L5E family protein3e-1At3g22450structural constituent of ribosomeO.I.H.G.S.X.
0.3644.0Os12g0256900At2g17870-TPR-like domain containing protein2e-8At4g02750pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.3440.0Os12g0142600At2g17870-DTW domain containing protein3e-2At5g17710EMB1241 (embryo defective 1241)O.I.H.G.S.X.
0.3440.0Os06g0526700At2g17870-Protein phosphatase 2C-like domain containingprotein2e-6At5g53140protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.3440.0Os03g0424600At2g17870-Conserved hypothetical protein4e-1At3g22820allergen-relatedO.I.H.G.S.X.
0.3338.8Os03g0753600At2g17870-Conserved hypothetical protein2e+0At1g47770beta-galactosidaseO.I.H.G.S.X.
0.3236.3Os02g0536400At2g17870-RNA-binding region RNP-1 (RNA recognition motif)domain containing protein2e+0At3g47295unknown proteinO.I.H.G.S.X.
0.3032.7Os01g0922000At2g17870-Hypothetical protein1e+0At1g65960GAD2 (GLUTAMATE DECARBOXYLASE 2)O.I.H.G.S.X.
0.2727.5Os11g0557700At2g17870-SAM (and some other nucleotide) binding motifdomain containing protein9e-7At4g34360protease-relatedO.I.H.G.S.X.
0.2727.5Os05g0153400At2g17870-TPR-like domain containing protein9e-4At5g16860pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.2524.1Os02g0814100At2g17870-Lecithin:cholesterol acyltransferase familyprotein3e-22At1g04010phosphatidate-sterol O-acyltransferase/ phosphatidylcholine-sterol O-acyltransferase/ phosphatidylethanolamine-sterol O-acyltransferaseO.I.H.G.S.X.
0.2524.1Os10g0142900At2g17870-Conserved hypothetical protein2e-2At2g24290unknown proteinO.I.H.G.S.X.
0.2321.2Os04g0349300At2g17870-Conserved hypothetical protein2e+0At3g28200peroxidase, putativeO.I.H.G.S.X.
0.1510.3Os01g0742200At2g17870-Elongation factor EF-2 (Fragment)9e-107At1g56070LOS1O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays



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