CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.99162.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g17870: cold-shock DNA-binding family protein (HF=1e+0)

Module size 6 genes

NF 0.50

%ile 80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 93.6 0.91 PtpAffx.99162.1.S1_at CV279989 hypothetical protein - 1e+0 At2g17870 cold-shock DNA-binding family protein O.I. H.G. S.X.
0.67 91.1 0.91 PtpAffx.158132.1.A1_at CV282478 hypothetical protein - 3e-12 At3g43670 copper amine oxidase, putative O.I. H.G. S.X.
0.61 87.0 0.92 PtpAffx.225478.1.S1_at pmrna44846 hypothetical protein - 8e-10 At1g29720 protein kinase family protein O.I. H.G. S.X.
0.50 78.6 0.91 PtpAffx.219046.1.S1_s_at pmrna34844 cytochrome P450 /// cytochrome P450 /// cytochrome P450 - 9e-2 At5g60530 late embryogenesis abundant protein-related / LEA protein-related O.I. H.G. S.X.
0.38 63.7 0.90 PtpAffx.159492.1.A1_at CV277474 - - 1e-2 At3g52550 - O.I. H.G. S.X.
0.24 41.8 0.91 PtpAffx.210950.1.S1_at pmrna21514 cationic amino acid transporter - 7e-14 At4g21120 AAT1 (AMINO ACID TRANSPORTER 1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.73	93.6	0.91	PtpAffx.99162.1.S1_at	CV279989	hypothetical protein	-	1e+0	At2g17870	cold-shock DNA-binding family protein	O.I.	H.G.	S.X.
0.67	91.1	0.91	PtpAffx.158132.1.A1_at	CV282478	hypothetical protein	-	3e-12	At3g43670	copper amine oxidase, putative	O.I.	H.G.	S.X.
0.61	87.0	0.92	PtpAffx.225478.1.S1_at	pmrna44846	hypothetical protein	-	8e-10	At1g29720	protein kinase family protein	O.I.	H.G.	S.X.
0.50	78.6	0.91	PtpAffx.219046.1.S1_s_at	pmrna34844	cytochrome P450 /// cytochrome P450 /// cytochrome P450	-	9e-2	At5g60530	late embryogenesis abundant protein-related / LEA protein-related	O.I.	H.G.	S.X.
0.38	63.7	0.90	PtpAffx.159492.1.A1_at	CV277474	-	-	1e-2	At3g52550	-	O.I.	H.G.	S.X.
0.24	41.8	0.91	PtpAffx.210950.1.S1_at	pmrna21514	cationic amino acid transporter	-	7e-14	At4g21120	AAT1 (AMINO ACID TRANSPORTER 1)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.1 98.1 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM244432 non infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8 92.1 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4 90.4 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2 89.3 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0 88.0 GSM244439 Mixed infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
7.1	98.1	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

A co-expression module including the rice gene, Os04g0534100, orthologous to the query gene, PtpAffx.99162.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.69 87.9 Os04g0534100 At2g17870 - Arabidopsis thaliana protein of unknown functionDUF821 family protein 1e-12 At1g63420 - O.I. H.G. S.X.
0.53 71.3 Os05g0247900 At2g17870 - SNF2-related domain containing protein 1e-7 At1g03750 SWI2 (SWITCH 2) O.I. H.G. S.X.
0.49 64.4 Os10g0518900 At2g17870 - DNA repair protein rad10 family protein 2e-1 At4g01050 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.48 63.7 Os07g0120700 At2g17870 - ARM repeat fold domain containing protein 3e-1 At1g51600 TIFY2A O.I. H.G. S.X.
0.44 58.1 Os09g0570600 At2g17870 - PAP/25A core domain containing protein 1e+0 At2g41860 CPK14 O.I. H.G. S.X.
0.42 53.9 Os11g0101200 At2g17870 - CCT domain containing protein 3e-1 At3g11100 transcription factor O.I. H.G. S.X.
0.40 51.1 Os03g0752200 At2g17870 - AtSPO11-1 2e-6 At3g13170 ATSPO11-1 O.I. H.G. S.X.
0.39 48.3 Os01g0324200 At2g17870 - SWIM Zn-finger domain containing protein 2e+0 At1g71200 DNA binding / transcription factor O.I. H.G. S.X.
0.37 45.0 Os11g0129800 At2g17870 - Hypothetical protein 8e-1 At5g14690 unknown protein O.I. H.G. S.X.
0.37 45.0 Os10g0484400 At2g17870 - Ribosomal protein L18P/L5E family protein 3e-1 At3g22450 structural constituent of ribosome O.I. H.G. S.X.
0.36 44.0 Os12g0256900 At2g17870 - TPR-like domain containing protein 2e-8 At4g02750 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.34 40.0 Os12g0142600 At2g17870 - DTW domain containing protein 3e-2 At5g17710 EMB1241 (embryo defective 1241) O.I. H.G. S.X.
0.34 40.0 Os06g0526700 At2g17870 - Protein phosphatase 2C-like domain containingprotein 2e-6 At5g53140 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.34 40.0 Os03g0424600 At2g17870 - Conserved hypothetical protein 4e-1 At3g22820 allergen-related O.I. H.G. S.X.
0.33 38.8 Os03g0753600 At2g17870 - Conserved hypothetical protein 2e+0 At1g47770 beta-galactosidase O.I. H.G. S.X.
0.32 36.3 Os02g0536400 At2g17870 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e+0 At3g47295 unknown protein O.I. H.G. S.X.
0.30 32.7 Os01g0922000 At2g17870 - Hypothetical protein 1e+0 At1g65960 GAD2 (GLUTAMATE DECARBOXYLASE 2) O.I. H.G. S.X.
0.27 27.5 Os11g0557700 At2g17870 - SAM (and some other nucleotide) binding motifdomain containing protein 9e-7 At4g34360 protease-related O.I. H.G. S.X.
0.27 27.5 Os05g0153400 At2g17870 - TPR-like domain containing protein 9e-4 At5g16860 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.25 24.1 Os02g0814100 At2g17870 - Lecithin:cholesterol acyltransferase familyprotein 3e-22 At1g04010 phosphatidate-sterol O-acyltransferase/ phosphatidylcholine-sterol O-acyltransferase/ phosphatidylethanolamine-sterol O-acyltransferase O.I. H.G. S.X.
0.25 24.1 Os10g0142900 At2g17870 - Conserved hypothetical protein 2e-2 At2g24290 unknown protein O.I. H.G. S.X.
0.23 21.2 Os04g0349300 At2g17870 - Conserved hypothetical protein 2e+0 At3g28200 peroxidase, putative O.I. H.G. S.X.
0.15 10.3 Os01g0742200 At2g17870 - Elongation factor EF-2 (Fragment) 9e-107 At1g56070 LOS1 O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.69	87.9	Os04g0534100	At2g17870	-	Arabidopsis thaliana protein of unknown functionDUF821 family protein	1e-12	At1g63420	-	O.I.	H.G.	S.X.
0.53	71.3	Os05g0247900	At2g17870	-	SNF2-related domain containing protein	1e-7	At1g03750	SWI2 (SWITCH 2)	O.I.	H.G.	S.X.
0.49	64.4	Os10g0518900	At2g17870	-	DNA repair protein rad10 family protein	2e-1	At4g01050	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.48	63.7	Os07g0120700	At2g17870	-	ARM repeat fold domain containing protein	3e-1	At1g51600	TIFY2A	O.I.	H.G.	S.X.
0.44	58.1	Os09g0570600	At2g17870	-	PAP/25A core domain containing protein	1e+0	At2g41860	CPK14	O.I.	H.G.	S.X.
0.42	53.9	Os11g0101200	At2g17870	-	CCT domain containing protein	3e-1	At3g11100	transcription factor	O.I.	H.G.	S.X.
0.40	51.1	Os03g0752200	At2g17870	-	AtSPO11-1	2e-6	At3g13170	ATSPO11-1	O.I.	H.G.	S.X.
0.39	48.3	Os01g0324200	At2g17870	-	SWIM Zn-finger domain containing protein	2e+0	At1g71200	DNA binding / transcription factor	O.I.	H.G.	S.X.
0.37	45.0	Os11g0129800	At2g17870	-	Hypothetical protein	8e-1	At5g14690	unknown protein	O.I.	H.G.	S.X.
0.37	45.0	Os10g0484400	At2g17870	-	Ribosomal protein L18P/L5E family protein	3e-1	At3g22450	structural constituent of ribosome	O.I.	H.G.	S.X.
0.36	44.0	Os12g0256900	At2g17870	-	TPR-like domain containing protein	2e-8	At4g02750	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.34	40.0	Os12g0142600	At2g17870	-	DTW domain containing protein	3e-2	At5g17710	EMB1241 (embryo defective 1241)	O.I.	H.G.	S.X.
0.34	40.0	Os06g0526700	At2g17870	-	Protein phosphatase 2C-like domain containingprotein	2e-6	At5g53140	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.
0.34	40.0	Os03g0424600	At2g17870	-	Conserved hypothetical protein	4e-1	At3g22820	allergen-related	O.I.	H.G.	S.X.
0.33	38.8	Os03g0753600	At2g17870	-	Conserved hypothetical protein	2e+0	At1g47770	beta-galactosidase	O.I.	H.G.	S.X.
0.32	36.3	Os02g0536400	At2g17870	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	2e+0	At3g47295	unknown protein	O.I.	H.G.	S.X.
0.30	32.7	Os01g0922000	At2g17870	-	Hypothetical protein	1e+0	At1g65960	GAD2 (GLUTAMATE DECARBOXYLASE 2)	O.I.	H.G.	S.X.
0.27	27.5	Os11g0557700	At2g17870	-	SAM (and some other nucleotide) binding motifdomain containing protein	9e-7	At4g34360	protease-related	O.I.	H.G.	S.X.
0.27	27.5	Os05g0153400	At2g17870	-	TPR-like domain containing protein	9e-4	At5g16860	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.25	24.1	Os02g0814100	At2g17870	-	Lecithin:cholesterol acyltransferase familyprotein	3e-22	At1g04010	phosphatidate-sterol O-acyltransferase/ phosphatidylcholine-sterol O-acyltransferase/ phosphatidylethanolamine-sterol O-acyltransferase	O.I.	H.G.	S.X.
0.25	24.1	Os10g0142900	At2g17870	-	Conserved hypothetical protein	2e-2	At2g24290	unknown protein	O.I.	H.G.	S.X.
0.23	21.2	Os04g0349300	At2g17870	-	Conserved hypothetical protein	2e+0	At3g28200	peroxidase, putative	O.I.	H.G.	S.X.
0.15	10.3	Os01g0742200	At2g17870	-	Elongation factor EF-2 (Fragment)	9e-107	At1g56070	LOS1	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	PtpAffx.99162.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g17870: cold-shock DNA-binding family protein (HF=1e+0)
Module size	6 genes
NF	0.50
%ile	80.8

Co-expression analysis

Gene ID PtpAffx.99162.1.S1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At2g17870: cold-shock DNA-binding family protein (HF=1e+0) Module size 6 genes NF 0.50 %ile 80.8

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.99162.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g17870: cold-shock DNA-binding family protein (HF=1e+0)

Module size 6 genes

NF 0.50

%ile 80.8

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays