Co-expression analysis

Gene ID PtpAffx.99162.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g17870: cold-shock DNA-binding family protein (HF=1e+0)
Module size 6 genes
NF 0.50
%ile 80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7393.60.91PtpAffx.99162.1.S1_atCV279989hypothetical protein-1e+0At2g17870cold-shock DNA-binding family proteinO.I.H.G.S.X.
0.6791.10.91PtpAffx.158132.1.A1_atCV282478hypothetical protein-3e-12At3g43670copper amine oxidase, putativeO.I.H.G.S.X.
0.6187.00.92PtpAffx.225478.1.S1_atpmrna44846hypothetical protein-8e-10At1g29720protein kinase family proteinO.I.H.G.S.X.
0.5078.60.91PtpAffx.219046.1.S1_s_atpmrna34844cytochrome P450 /// cytochrome P450 /// cytochrome P450-9e-2At5g60530late embryogenesis abundant protein-related / LEA protein-relatedO.I.H.G.S.X.
0.3863.70.90PtpAffx.159492.1.A1_atCV277474--1e-2At3g52550-O.I.H.G.S.X.
0.2441.80.91PtpAffx.210950.1.S1_atpmrna21514cationic amino acid transporter-7e-14At4g21120AAT1 (AMINO ACID TRANSPORTER 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.198.1GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.892.1GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.490.4GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.088.0GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.89162.1.S1_s_at, orthologous to the query gene, PtpAffx.99162.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7689.7GmaAffx.89162.1.S1_s_atAt2g17870--1e+0At1g04100IAA10O.I.H.G.S.X.
0.3346.1GmaAffx.24844.1.S1_atAt2g17870--3e+0At5g02210-O.I.H.G.S.X.
0.2839.0GmaAffx.43695.1.A1_atAt2g17870--1e+0At5g61605unknown proteinO.I.H.G.S.X.
0.2735.7GmaAffx.81592.1.S1_atAt2g17870--2e-2At3g14280unknown proteinO.I.H.G.S.X.
0.2532.6GmaAffx.50646.1.A1_atAt2g17870--1e+1At5g14560unknown proteinO.I.H.G.S.X.
0.2430.9GmaAffx.74241.1.S1_atAt2g17870--1e-6At1g75130CYP721A1O.I.H.G.S.X.
0.2329.9GmaAffx.74241.2.A1_atAt2g17870--9e-5At1g75130CYP721A1O.I.H.G.S.X.
0.2228.1GmaAffx.91969.1.S1_s_atAt2g17870--3e-35At1g30270CIPK23 (CBL-INTERACTING PROTEIN KINASE 23)O.I.H.G.S.X.
0.2126.6Gma.1421.2.S1_atAt2g17870--4e-7At5g47730SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putativeO.I.H.G.S.X.
0.2126.6GmaAffx.19566.1.S1_atAt2g17870--2e-2At3g60550CYCP3O.I.H.G.S.X.
0.2126.6Gma.68.1.S1_atAt2g17870ethylene-responsive element binding protein 1-7e-9At4g17500ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)O.I.H.G.S.X.
0.2126.6Gma.2377.1.S1_atAt2g17870--2e-1At4g2574040S ribosomal protein S10 (RPS10A)O.I.H.G.S.X.
0.2025.1Gma.15889.1.S1_atAt2g17870WRKY48 protein-3e-12At3g58710WRKY69O.I.H.G.S.X.
0.2025.1GmaAffx.38693.1.S1_atAt2g17870--1e-8At4g17800DNA-binding protein-relatedO.I.H.G.S.X.
0.1923.7Gma.14471.4.S1_x_atAt2g17870--7e-30At2g37180RD28 (RESPONSIVE TO DESICCATION 28)O.I.H.G.S.X.
0.1923.7Gma.14471.4.S1_a_atAt2g17870--7e-30At2g37180RD28 (RESPONSIVE TO DESICCATION 28)O.I.H.G.S.X.
0.1619.7GmaAffx.43008.1.S1_atAt2g17870--8e-1At2g13570NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7)O.I.H.G.S.X.
0.1518.7Gma.666.1.S1_atAt2g17870--1e-5At1g60730aldo/keto reductase family proteinO.I.H.G.S.X.
0.1518.7Gma.11084.1.S1_atAt2g17870--6e-4At1g76520auxin efflux carrier family proteinO.I.H.G.S.X.
0.1215.1GmaAffx.68508.1.S1_atAt2g17870--2e+0At5g59400unknown proteinO.I.H.G.S.X.
0.1215.1Gma.11024.5.S1_s_atAt2g17870--2e-1At4g17340TIP2O.I.H.G.S.X.
0.1114.2GmaAffx.80884.1.S1_atAt2g17870MYB transcription factor MYB51-2e+0At5g58900myb family transcription factorO.I.H.G.S.X.
0.0912.0Gma.635.1.A1_atAt2g17870--1e+0At1g65295unknown proteinO.I.H.G.S.X.
0.0710.2Gma.10616.2.S1_a_atAt2g17870--3e-13At4g21790TOM1 (TOBAMOVIRUS MULTIPLICATION 1)O.I.H.G.S.X.
0.058.0Gma.593.2.S1_x_atAt2g17870MYB transcription factor MYB173-2e-9At1g74840myb family transcription factorO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage