CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.99162.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g17870: cold-shock DNA-binding family protein (HF=1e+0)

Module size 6 genes

NF 0.50

%ile 80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 93.6 0.91 PtpAffx.99162.1.S1_at CV279989 hypothetical protein - 1e+0 At2g17870 cold-shock DNA-binding family protein O.I. H.G. S.X.
0.67 91.1 0.91 PtpAffx.158132.1.A1_at CV282478 hypothetical protein - 3e-12 At3g43670 copper amine oxidase, putative O.I. H.G. S.X.
0.61 87.0 0.92 PtpAffx.225478.1.S1_at pmrna44846 hypothetical protein - 8e-10 At1g29720 protein kinase family protein O.I. H.G. S.X.
0.50 78.6 0.91 PtpAffx.219046.1.S1_s_at pmrna34844 cytochrome P450 /// cytochrome P450 /// cytochrome P450 - 9e-2 At5g60530 late embryogenesis abundant protein-related / LEA protein-related O.I. H.G. S.X.
0.38 63.7 0.90 PtpAffx.159492.1.A1_at CV277474 - - 1e-2 At3g52550 - O.I. H.G. S.X.
0.24 41.8 0.91 PtpAffx.210950.1.S1_at pmrna21514 cationic amino acid transporter - 7e-14 At4g21120 AAT1 (AMINO ACID TRANSPORTER 1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.1 98.1 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM244432 non infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8 92.1 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4 90.4 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2 89.3 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0 88.0 GSM244439 Mixed infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g17870, orthologous to the query gene, PtpAffx.99162.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.60 75.7 At2g17870 816297 cold-shock DNA-binding family protein F:DNA binding, zinc ion binding, nucleic acid binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BMOVPFA O.I. H.G. S.X.
0.36 43.6 At4g25210 828624 transcription regulator F:transcription regulator activity;P:biological_process unknown;C:nucleolus, chloroplast;OMFBPVA O.I. H.G. S.X.
0.26 24.4 At5g16260 831486 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFPOB O.I. H.G. S.X.
0.25 22.6 At3g18165 821343 MOS4 (Modifier of snc1,4) Encodes MOS4 (Modifier of snc1, 4), a nuclear protein homologous to human Breast Cancer-Amplified Sequence (BCAS2). MOS4 interacts with AtCDC5 and PRL1. All three proteins are essential for plant innate immunity. O.I. H.G. S.X.
0.23 19.3 At4g19150 827653 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:unknown;MOFBPVA O.I. H.G. S.X.
0.16 8.8 At5g52040 835279 ATRSP41 encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. O.I. H.G. S.X.
0.12 4.9 At2g20280 816547 zinc finger (CCCH-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBA O.I. H.G. S.X.
0.11 4.1 At2g33410 817905 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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