Co-expression analysis

Gene ID PtpAffx.99162.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g17870: cold-shock DNA-binding family protein (HF=1e+0)
Module size 6 genes
NF 0.50
%ile 80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7393.60.91PtpAffx.99162.1.S1_atCV279989hypothetical protein-1e+0At2g17870cold-shock DNA-binding family proteinO.I.H.G.S.X.
0.6791.10.91PtpAffx.158132.1.A1_atCV282478hypothetical protein-3e-12At3g43670copper amine oxidase, putativeO.I.H.G.S.X.
0.6187.00.92PtpAffx.225478.1.S1_atpmrna44846hypothetical protein-8e-10At1g29720protein kinase family proteinO.I.H.G.S.X.
0.5078.60.91PtpAffx.219046.1.S1_s_atpmrna34844cytochrome P450 /// cytochrome P450 /// cytochrome P450-9e-2At5g60530late embryogenesis abundant protein-related / LEA protein-relatedO.I.H.G.S.X.
0.3863.70.90PtpAffx.159492.1.A1_atCV277474--1e-2At3g52550-O.I.H.G.S.X.
0.2441.80.91PtpAffx.210950.1.S1_atpmrna21514cationic amino acid transporter-7e-14At4g21120AAT1 (AMINO ACID TRANSPORTER 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.198.1GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.892.1GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.490.4GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.088.0GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g17870, orthologous to the query gene, PtpAffx.99162.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.6075.7At2g17870816297cold-shock DNA-binding family proteinF:DNA binding, zinc ion binding, nucleic acid binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BMOVPFAO.I.H.G.S.X.
0.3643.6At4g25210828624transcription regulatorF:transcription regulator activity;P:biological_process unknown;C:nucleolus, chloroplast;OMFBPVAO.I.H.G.S.X.
0.2624.4At5g16260831486RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFPOBO.I.H.G.S.X.
0.2522.6At3g18165821343MOS4 (Modifier of snc1,4)Encodes MOS4 (Modifier of snc1, 4), a nuclear protein homologous to human Breast Cancer-Amplified Sequence (BCAS2). MOS4 interacts with AtCDC5 and PRL1. All three proteins are essential for plant innate immunity.O.I.H.G.S.X.
0.2319.3At4g19150827653ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:unknown;MOFBPVAO.I.H.G.S.X.
0.168.8At5g52040835279ATRSP41encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined.O.I.H.G.S.X.
0.124.9At2g20280816547zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBAO.I.H.G.S.X.
0.114.1At2g33410817905heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVAO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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