Co-expression analysis

Gene ID PtpAffx.99107.3.A1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g19640: ARA7 (HF=6e-64)
Module size 6 genes
NF 0.43
%ile 71.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5582.20.96PtpAffx.99107.3.A1_s_atCV240653hypothetical protein-6e-64At4g19640ARA7O.I.H.G.S.X.
0.5582.20.96PtpAffx.135825.1.S1_atCF936294hypothetical protein-8e-34At3g46180UTR5 (UDP-GALACTOSE TRANSPORTER 5)O.I.H.G.S.X.
0.4471.90.96Ptp.7060.1.A1_x_atCV262139hypothetical protein-9e-27At1g23290RPL27ABO.I.H.G.S.X.
0.4471.90.96Ptp.3625.1.A1_atCV267089hypothetical protein-2e-12At3g07560PEX13 (PEROXIN 13)O.I.H.G.S.X.
0.3052.00.96PtpAffx.30368.1.S1_atCV254627hypothetical protein-1e-1At1g76180ERD14 (EARLY RESPONSE TO DEHYDRATION 14)O.I.H.G.S.X.
0.2950.50.96PtpAffx.36802.1.S1_atBP936440hypothetical protein-2e-44At3g17000UBC32 (ubiquitin-conjugating enzyme 32)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.196.8GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
4.495.9GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.794.7GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1609774_s_at, orthologous to the query gene, PtpAffx.99107.3.A1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6787.91609774_s_atAt4g19640hypothetical protein LOC100258211-2e-34At5g45130RHA1 (RAB HOMOLOG 1)O.I.H.G.S.X.
0.4666.51619904_atAt4g19640--8e-42At5g42300UBL5 (UBIQUITIN-LIKE PROTEIN 5)O.I.H.G.S.X.
0.3345.71608449_atAt4g19640hypothetical protein LOC100247109-6e-72At1g19580GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)O.I.H.G.S.X.
0.2632.01622486_atAt4g19640hypothetical protein LOC100247768-3e-13At4g13520SMAP1 (SMALL ACIDIC PROTEIN 1)O.I.H.G.S.X.
0.1515.61614946_atAt4g19640hypothetical protein LOC100258219-8e-64At4g2482026S proteasome regulatory subunit, putative (RPN7)O.I.H.G.S.X.
0.1111.31621416_atAt4g19640hypothetical protein LOC100263998-5e-94At1g49300RABG3E (RAB GTPASE HOMOLOG G3E)O.I.H.G.S.X.
0.1111.31609017_s_atAt4g19640hypothetical protein LOC100262493-1e-6At3g14430unknown proteinO.I.H.G.S.X.
0.099.41619057_atAt4g19640hypothetical protein LOC100252925-1e-17At1g56700pyrrolidone-carboxylate peptidase family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



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