CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.98987.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g16453: - (HF=1e+0)

Module size 6 genes

NF 0.33

%ile 58.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 78.6 0.95 PtpAffx.98987.1.S1_s_at DN500449 hypothetical protein - 1e+0 At5g16453 - O.I. H.G. S.X.
0.50 78.6 0.96 Ptp.4100.1.A1_a_at BP930485 hypothetical protein - 1e-66 At1g43710 emb1075 (embryo defective 1075) O.I. H.G. S.X.
0.50 78.6 0.97 Ptp.5458.1.S1_s_at CV261214 hypothetical protein - 2e+0 At5g22650 HD2B (HISTONE DEACETYLASE 2B) O.I. H.G. S.X.
0.31 53.7 0.96 PtpAffx.124389.1.S1_at BU809679 hypothetical protein - 7e-68 At1g43710 emb1075 (embryo defective 1075) O.I. H.G. S.X.
0.24 41.8 0.95 PtpAffx.119499.2.A1_s_at BP930188 hypothetical protein - 3e-52 At1g10950 endomembrane protein 70, putative O.I. H.G. S.X.
0.21 36.5 0.95 Ptp.5458.1.S1_at CV261214 hypothetical protein - 2e+0 At5g22650 HD2B (HISTONE DEACETYLASE 2B) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.9 97.4 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.9 96.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6 91.3 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the maize gene, Zm.16237.1.A1_at, orthologous to the query gene, PtpAffx.98987.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.43 52.8 Zm.16237.1.A1_at At5g16453 - - 5e-13 At2g30110 ATUBA1 O.I. H.G. S.X.
0.52 67.3 Zm.4625.1.A1_at At5g16453 - - 8e-1 At1g78630 emb1473 (embryo defective 1473) O.I. H.G. S.X.
0.40 48.5 ZmAffx.885.1.A1_at At5g16453 - - 2e-4 At1g77670 aminotransferase class I and II family protein O.I. H.G. S.X.
0.40 48.5 ZmAffx.925.1.S1_at At5g16453 - - 8e-1 At1g43171 unknown protein O.I. H.G. S.X.
0.38 44.2 ZmAffx.786.1.A1_at At5g16453 - - 3e-3 At1g72450 JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6) O.I. H.G. S.X.
0.37 42.3 ZmAffx.566.1.A1_at At5g16453 - - 2e-1 At5g05610 AL1 (ALFIN-LIKE 1) O.I. H.G. S.X.
0.33 36.0 Zm.13162.1.A1_at At5g16453 - - 9e-3 At3g02040 SRG3 (senescence-related gene 3) O.I. H.G. S.X.
0.21 15.5 Zm.14617.1.A1_at At5g16453 Hypothetical protein LOC100191188 - 2e+0 At2g33130 RALFL18 (ralf-like 18) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera

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