Co-expression analysis

Gene ID PtpAffx.98987.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g16453: - (HF=1e+0)
Module size 6 genes
NF 0.33
%ile 58.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5078.60.95PtpAffx.98987.1.S1_s_atDN500449hypothetical protein-1e+0At5g16453-O.I.H.G.S.X.
0.5078.60.96Ptp.4100.1.A1_a_atBP930485hypothetical protein-1e-66At1g43710emb1075 (embryo defective 1075)O.I.H.G.S.X.
0.5078.60.97Ptp.5458.1.S1_s_atCV261214hypothetical protein-2e+0At5g22650HD2B (HISTONE DEACETYLASE 2B)O.I.H.G.S.X.
0.3153.70.96PtpAffx.124389.1.S1_atBU809679hypothetical protein-7e-68At1g43710emb1075 (embryo defective 1075)O.I.H.G.S.X.
0.2441.80.95PtpAffx.119499.2.A1_s_atBP930188hypothetical protein-3e-52At1g10950endomembrane protein 70, putativeO.I.H.G.S.X.
0.2136.50.95Ptp.5458.1.S1_atCV261214hypothetical protein-2e+0At5g22650HD2B (HISTONE DEACETYLASE 2B)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.997.4GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.996.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.594.3GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.193.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os10g0358000, orthologous to the query gene, PtpAffx.98987.1.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6181.2Os10g0358000At5g16453--1e+0At3g12955auxin-responsive protein-relatedO.I.H.G.S.X.
0.6181.2Os08g0420800At5g16453-Conserved hypothetical protein8e+0At5g48670AGL80 (AGAMOUS-LIKE 80)O.I.H.G.S.X.
0.6181.2Os03g0260000At5g16453-Dynamin family protein5e+0At1g60530dynamin family proteinO.I.H.G.S.X.
0.5978.0Os01g0214732At5g16453--2e+0At3g53650histone H2B, putativeO.I.H.G.S.X.
0.5573.7Os06g0103000At5g16453--3e-1At3g29780RALFL27 (ralf-like 27)O.I.H.G.S.X.
0.5068.0Os09g0288200At5g16453--1e+0At1g52460hydrolaseO.I.H.G.S.X.
0.4762.3Os07g0587800At5g16453--5e+0At2g41430ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays



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