Co-expression analysis

Gene ID	PtpAffx.98987.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g16453: - (HF=1e+0)
Module size	6 genes
NF	0.33
%ile	58.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.95	PtpAffx.98987.1.S1_s_at	DN500449	hypothetical protein	-	1e+0	At5g16453	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	Ptp.4100.1.A1_a_at	BP930485	hypothetical protein	-	1e-66	At1g43710	emb1075 (embryo defective 1075)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	Ptp.5458.1.S1_s_at	CV261214	hypothetical protein	-	2e+0	At5g22650	HD2B (HISTONE DEACETYLASE 2B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.96	PtpAffx.124389.1.S1_at	BU809679	hypothetical protein	-	7e-68	At1g43710	emb1075 (embryo defective 1075)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.95	PtpAffx.119499.2.A1_s_at	BP930188	hypothetical protein	-	3e-52	At1g10950	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.95	Ptp.5458.1.S1_at	CV261214	hypothetical protein	-	2e+0	At5g22650	HD2B (HISTONE DEACETYLASE 2B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	97.4	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.69410.1.S1_at, orthologous to the query gene, PtpAffx.98987.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	99.1	GmaAffx.69410.1.S1_at	At5g16453	-	-	1e+0	At1g23060	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	78.8	GmaAffx.90685.1.S1_at	At5g16453	-	-	1e+0	At5g49700	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.55	76.3	GmaAffx.90685.1.S1_x_at	At5g16453	-	-	1e+0	At5g49700	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.86247.1.S1_s_at	At5g16453	-	-	2e-11	At1g07040	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.55267.1.S1_at	At5g16453	-	-	4e-6	At1g33090	MATE efflux family protein	O.I.	H.G.	S.X.	Please select
0.45	63.9	Gma.1195.1.S1_s_at	At5g16453	-	-	5e-25	At3g27890	NQR (NADPH:QUINONE OXIDOREDUCTASE)	O.I.	H.G.	S.X.	Please select
0.44	63.3	GmaAffx.83583.1.S1_s_at	At5g16453	-	-	3e-12	At3g23800	SBP3 (selenium-binding protein 3)	O.I.	H.G.	S.X.	Please select
0.44	63.3	Gma.6299.3.S1_at	At5g16453	-	-	6e-17	At3g23800	SBP3 (selenium-binding protein 3)	O.I.	H.G.	S.X.	Please select
0.41	58.1	Gma.5331.1.S1_at	At5g16453	NAC domain protein	-	8e-7	At1g52890	ANAC019 (Arabidopsis NAC domain containing protein 19)	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.5331.1.S1_a_at	At5g16453	NAC domain protein NAC4	-	8e-7	At1g52890	ANAC019 (Arabidopsis NAC domain containing protein 19)	O.I.	H.G.	S.X.	Please select
0.37	51.7	GmaAffx.91964.1.S1_at	At5g16453	-	-	4e-26	At1g66200	ATGSR2	O.I.	H.G.	S.X.	Please select
0.37	51.7	GmaAffx.41354.1.S1_at	At5g16453	-	-	6e+0	At5g66550	Maf family protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.2047.1.S1_at	At5g16453	-	-	2e-14	At3g28570	AAA-type ATPase family protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.92792.1.S1_s_at	At5g16453	-	-	4e-3	At1g52200	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	GmaAffx.91496.1.S1_s_at	At5g16453	-	-	4e+0	At3g17300	-	O.I.	H.G.	S.X.	Please select
0.31	42.2	Gma.7325.1.S1_at	At5g16453	-	-	2e+0	At1g53625	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	GmaAffx.27818.2.S1_at	At5g16453	-	-	4e-16	At3g26820	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.26	33.9	GmaAffx.66195.1.S1_at	At5g16453	-	-	1e-12	At5g11950	protein homodimerization	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.7853.1.S1_s_at	At5g16453	-	-	1e-1	At5g18540	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	GmaAffx.57389.1.S1_at	At5g16453	-	-	6e-1	At1g21940	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	GmaAffx.42697.1.S1_at	At5g16453	-	-	3e+0	At1g37140	MCT1 (mei2 C-Terminal RRM only like 1)	O.I.	H.G.	S.X.	Please select
0.25	32.6	GmaAffx.92649.1.S1_at	At5g16453	-	-	6e-3	At4g16690	MES16 (METHYL ESTERASE 16)	O.I.	H.G.	S.X.	Please select
0.24	30.9	Gma.5867.1.A1_s_at	At5g16453	-	-	3e+0	At5g48890	transcription factor	O.I.	H.G.	S.X.	Please select
0.24	30.9	Gma.8331.1.S1_at	At5g16453	-	-	4e-34	At1g23800	ALDH2B7	O.I.	H.G.	S.X.	Please select
0.23	29.9	Gma.8519.1.S1_at	At5g16453	glutathione S-transferase GST 6	-	2e-3	At1g59700	ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16)	O.I.	H.G.	S.X.	Please select
0.23	29.9	Gma.7853.1.S1_at	At5g16453	-	-	1e-1	At5g18540	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.90855.1.S1_s_at	At5g16453	-	-	2e-17	At2g47800	ATMRP4 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.12	15.1	GmaAffx.48979.1.S1_at	At5g16453	-	-	9e+0	At4g10720	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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