Co-expression analysis

Gene ID PtpAffx.983.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g64180: unknown protein (HF=5e-10)
Module size 6 genes
NF 0.39
%ile 66.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6187.00.94PtpAffx.983.1.A1_atCX172753hypothetical protein-5e-10At5g64180unknown proteinO.I.H.G.S.X.
0.6791.10.94PtpAffx.258.2.S1_x_atCX171155hypothetical protein-6e-19At1g64750ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))O.I.H.G.S.X.
0.4067.00.94PtpAffx.904.1.A1_a_atCK097736hypothetical protein-1e-6At3g20510unknown proteinO.I.H.G.S.X.
0.3661.60.94PtpAffx.206821.1.S1_atpmrna13538hypothetical protein-1e-5At5g11030ALF4 (ABERRANT LATERAL ROOT FORMATION 4)O.I.H.G.S.X.
0.2645.20.94PtpAffx.125849.1.A1_atBP934056hypothetical protein-1e+0At5g14800P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE)O.I.H.G.S.X.
0.2238.30.94PtpAffx.25187.1.S1_atBP934847hypothetical protein-2e-90At4g26570ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.395.8GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.987.2GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.886.4GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.785.5GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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