Co-expression analysis

Gene ID	PtpAffx.98176.1.S1_at
Gene name	SAUR family protein /// SAUR family protein
Homology with Arabidopsis	Similar to At4g30390: unknown protein (HF=2e+0)
Module size	11 genes
NF	0.11
%ile	21.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	95.1	0.78	PtpAffx.98176.1.S1_at	BU889542	SAUR family protein /// SAUR family protein	-	2e+0	At4g30390	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.89	PtpAffx.209168.1.S1_s_at	pmrna18153	hypothetical protein	-	1e-10	At5g39760	AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.83	Ptp.7364.1.S1_a_at	CA929119	hypothetical protein	-	2e+0	At2g47910	CRR6 (chlororespiratory reduction 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.87	PtpAffx.129254.1.S1_at	CV267259	Ca2+ antiporter/cation exchanger	-	4e+0	At3g14070	CAX9 (CATION EXCHANGER 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.90	PtpAffx.210687.1.S1_at	pmrna20954	hypothetical protein	-	8e-31	At5g50915	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.87	PtpAffx.70870.1.S1_at	CX185554	hypothetical protein	-	7e-2	At1g68825	RTFL15 (ROTUNDIFOLIA LIKE 15)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.90	PtpAffx.225023.1.S1_at	pmrna44036	hypothetical protein	-	7e-2	At5g14200	3-isopropylmalate dehydrogenase, chloroplast, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.87	PtpAffx.7275.1.S1_at	BI122079	hypothetical protein	-	2e-1	At3g26561	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.83	PtpAffx.64701.2.S1_a_at	CX184746	histone 2	-	6e-12	At3g54560	HTA11	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.86	PtpAffx.203509.1.S1_at	pmrna6978	hypothetical protein	-	3e+0	At5g07160	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.82	PtpAffx.249.452.S1_at	AJ778458	hypothetical protein	-	5e-3	At1g54410	dehydrin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.9	98.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.1	97.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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