Co-expression analysis

Gene ID	PtpAffx.97277.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g51450: RIN3 (RPM1 INTERACTING PROTEIN 3) (HF=8e-38)
Module size	9 genes
NF	0.62
%ile	92.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	80.5	0.95	PtpAffx.97277.1.S1_at	CV262016	hypothetical protein	-	8e-38	At5g51450	RIN3 (RPM1 INTERACTING PROTEIN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.96	Ptp.1463.3.A1_s_at	CV263405	hypothetical protein	-	1e-4	At4g19200	proline-rich family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	Ptp.3882.1.S1_at	CV264407	hypothetical protein	-	2e-19	At5g47120	ATBI1 (BAX INHIBITOR 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.96	PtpAffx.145060.1.A1_at	CV249802	hypothetical protein	-	3e-23	At4g35500	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.97	PtpAffx.13438.1.S1_s_at	AI167052	hypothetical protein	-	2e-96	At3g28715	H+-transporting two-sector ATPase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.96	PtpAffx.23209.1.S1_at	BP933116	hypothetical protein	-	2e-35	At4g22330	ATCES1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.97	PtpAffx.43623.2.A1_a_at	CV227115	hypothetical protein	-	7e-5	At3g03610	phagocytosis and cell motility protein ELMO1-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	Ptp.6966.1.S1_s_at	CV239698	-	-	4e-14	At5g14030	translocon-associated protein beta (TRAPB) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.96	PtpAffx.13792.1.S1_at	CV267483	hypothetical protein	-	4e-20	At3g49390	CID10	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7	91.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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