CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.97116.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g28690: protein kinase, putative (HF=1e-13)

Module size 7 genes

NF 0.26

%ile 46.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 82.2 0.93 PtpAffx.97116.1.S1_at CK099593 hypothetical protein - 1e-13 At3g28690 protein kinase, putative O.I. H.G. S.X.
0.35 59.7 0.94 Ptp.6305.2.A1_at DN484232 hypothetical protein - 2e-8 At1g55840 SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein O.I. H.G. S.X.
0.31 53.7 0.94 Ptp.7603.1.S1_at DN494879 - - 6e-2 At1g31120 KUP10 O.I. H.G. S.X.
0.28 50.5 0.93 Ptp.607.1.S1_at CK087237 hypothetical protein - 1e-17 At5g54680 ILR3 (iaa-leucine resistant3) O.I. H.G. S.X.
0.19 32.7 0.93 Ptp.788.1.S1_at CK089255 hypothetical protein - 2e-38 At4g38240 CGL1 (COMPLEX GLYCAN LESS 1) O.I. H.G. S.X.
0.18 30.8 0.93 Ptp.6822.1.S1_at DN500216 - - 5e+0 At5g26740 unknown protein O.I. H.G. S.X.
0.17 29.1 0.93 PtpAffx.32281.1.A1_at CV225439 hypothetical protein - 2e-8 At1g67530 armadillo/beta-catenin repeat family protein / U-box domain-containing family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.55	82.2	0.93	PtpAffx.97116.1.S1_at	CK099593	hypothetical protein	-	1e-13	At3g28690	protein kinase, putative	O.I.	H.G.	S.X.
0.35	59.7	0.94	Ptp.6305.2.A1_at	DN484232	hypothetical protein	-	2e-8	At1g55840	SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein	O.I.	H.G.	S.X.
0.31	53.7	0.94	Ptp.7603.1.S1_at	DN494879	-	-	6e-2	At1g31120	KUP10	O.I.	H.G.	S.X.
0.28	50.5	0.93	Ptp.607.1.S1_at	CK087237	hypothetical protein	-	1e-17	At5g54680	ILR3 (iaa-leucine resistant3)	O.I.	H.G.	S.X.
0.19	32.7	0.93	Ptp.788.1.S1_at	CK089255	hypothetical protein	-	2e-38	At4g38240	CGL1 (COMPLEX GLYCAN LESS 1)	O.I.	H.G.	S.X.
0.18	30.8	0.93	Ptp.6822.1.S1_at	DN500216	-	-	5e+0	At5g26740	unknown protein	O.I.	H.G.	S.X.
0.17	29.1	0.93	PtpAffx.32281.1.A1_at	CV225439	hypothetical protein	-	2e-8	At1g67530	armadillo/beta-catenin repeat family protein / U-box domain-containing family protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.57	84.2	0.91	Ptp.6498.2.S1_at	AI162148	hypothetical protein	-	1e+0	At5g36280	-	O.I.	H.G.	S.X.
0.53	80.5	0.89	PtpAffx.55815.1.A1_at	CK097850	hypothetical protein	-	2e-4	At4g08980	F-box family protein (FBW2)	O.I.	H.G.	S.X.
0.44	71.9	0.93	PtpAffx.41014.1.S1_at	BU822588	-	-	4e+0	At3g62920	unknown protein	O.I.	H.G.	S.X.
0.40	67.0	0.90	Ptp.121.1.S1_at	CK088203	hypothetical protein	-	1e-10	At4g23640	TRH1 (TINY ROOT HAIR 1)	O.I.	H.G.	S.X.
0.40	67.0	0.92	Ptp.3290.1.S1_at	BU835954	hypothetical protein	-	1e-3	At5g08200	peptidoglycan-binding LysM domain-containing protein	O.I.	H.G.	S.X.
0.40	67.0	0.92	Ptp.1731.1.A1_at	CK093318	hypothetical protein	-	8e+0	At5g22190	unknown protein	O.I.	H.G.	S.X.
0.40	67.0	0.92	PtpAffx.6975.1.S1_at	CN519555	hypothetical protein	-	5e-1	At3g59680	unknown protein	O.I.	H.G.	S.X.
0.40	67.0	0.94	Ptp.1730.1.A1_at	CK093317	-	-	5e+0	At5g62330	-	O.I.	H.G.	S.X.
0.38	63.7	0.90	PtpAffx.211659.1.S1_at	pmrna22845	NAC domain protein, IPR003441	-	8e-1	At5g13180	ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83)	O.I.	H.G.	S.X.
0.38	63.7	0.91	PtpAffx.205348.1.S1_at	pmrna10585	hypothetical protein	-	4e-27	At3g50620	nodulation protein-related	O.I.	H.G.	S.X.
0.36	61.6	0.90	Ptp.3237.1.S1_at	DN495578	hypothetical protein	-	2e+0	At2g35736	unknown protein	O.I.	H.G.	S.X.
0.36	61.6	0.92	PtpAffx.217195.1.S1_s_at	pmrna32355	hypothetical protein	-	3e-2	At4g00940	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.
0.35	59.7	0.89	PtpAffx.225516.1.S1_at	pmrna44920	cc-nbs-lrr resistance protein	-	4e-1	At3g14470	disease resistance protein (NBS-LRR class), putative	O.I.	H.G.	S.X.
0.33	57.5	0.89	Ptp.1933.1.A1_at	CK093171	-	-	5e+0	At2g47960	unknown protein	O.I.	H.G.	S.X.
0.33	57.5	0.90	PtpAffx.19609.1.A1_a_at	CV260417	hypothetical protein	-	2e-10	At1g67330	unknown protein	O.I.	H.G.	S.X.
0.31	53.7	0.93	PtpAffx.150303.1.S1_s_at	CN550503	hypothetical protein	-	9e-9	At3g24530	AAA-type ATPase family protein / ankyrin repeat family protein	O.I.	H.G.	S.X.
0.29	50.5	0.88	PtpAffx.212506.1.S1_at	pmrna24493	hypothetical protein	-	1e-1	At5g65925	unknown protein	O.I.	H.G.	S.X.
0.29	50.5	0.90	PtpAffx.99687.1.S1_at	DN494140	hypothetical protein	-	1e-10	At3g58690	protein kinase family protein	O.I.	H.G.	S.X.
0.27	47.1	0.91	PtpAffx.215251.1.S1_at	pmrna29336	hypothetical protein	-	1e+0	At2g01590	CRR3 (CHLORORESPIRATORY REDUCTION 3)	O.I.	H.G.	S.X.
0.26	45.2	0.91	PtpAffx.32983.1.S1_at	CK092556	-	-	9e-1	At1g67920	unknown protein	O.I.	H.G.	S.X.
0.26	45.2	0.89	PtpAffx.45188.1.A1_at	CN522083	-	-	1e-1	At2g39560	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.89	PtpAffx.18217.1.A1_at	CV245465	hypothetical protein	-	7e-77	At3g25860	LTA2	O.I.	H.G.	S.X.
0.25	43.6	0.89	Ptp.7689.1.S1_s_at	DN498287	hypothetical protein	-	5e+0	At5g20165	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.90	PtpAffx.91442.1.S1_at	CF228469	hypothetical protein	-	5e-37	At2g30820	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.90	Ptp.3187.1.S1_at	CF229431	hypothetical protein	-	2e-16	At1g67510	leucine-rich repeat family protein	O.I.	H.G.	S.X.
0.25	43.6	0.90	Ptp.7671.1.A1_at	DN498614	hypothetical protein	-	1e+0	At5g64250	2-nitropropane dioxygenase family / NPD family	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.9 97.4 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.5 97.1 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
5.9	97.4	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.5	97.1	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	PtpAffx.97116.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g28690: protein kinase, putative (HF=1e-13)
Module size	7 genes
NF	0.26
%ile	46.2

Co-expression analysis

Gene ID PtpAffx.97116.1.S1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At3g28690: protein kinase, putative (HF=1e-13) Module size 7 genes NF 0.26 %ile 46.2

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.97116.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g28690: protein kinase, putative (HF=1e-13)

Module size 7 genes

NF 0.26

%ile 46.2

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays