Co-expression analysis

Gene ID PtpAffx.97116.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g28690: protein kinase, putative (HF=1e-13)
Module size 7 genes
NF 0.26
%ile 46.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5582.20.93PtpAffx.97116.1.S1_atCK099593hypothetical protein-1e-13At3g28690protein kinase, putativeO.I.H.G.S.X.
0.3559.70.94Ptp.6305.2.A1_atDN484232hypothetical protein-2e-8At1g55840SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer proteinO.I.H.G.S.X.
0.3153.70.94Ptp.7603.1.S1_atDN494879--6e-2At1g31120KUP10O.I.H.G.S.X.
0.2850.50.93Ptp.607.1.S1_atCK087237hypothetical protein-1e-17At5g54680ILR3 (iaa-leucine resistant3)O.I.H.G.S.X.
0.1932.70.93Ptp.788.1.S1_atCK089255hypothetical protein-2e-38At4g38240CGL1 (COMPLEX GLYCAN LESS 1)O.I.H.G.S.X.
0.1830.80.93Ptp.6822.1.S1_atDN500216--5e+0At5g26740unknown proteinO.I.H.G.S.X.
0.1729.10.93PtpAffx.32281.1.A1_atCV225439hypothetical protein-2e-8At1g67530armadillo/beta-catenin repeat family protein / U-box domain-containing family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.997.4GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
5.597.1GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.694.5GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.694.5GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.494.0GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM328063Populus x canescens leaf control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.4078.1.A1_at, orthologous to the query gene, PtpAffx.97116.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8094.0Zm.4078.1.A1_atAt3g28690protein kinase APK1A-6e-16At3g01300protein kinase, putativeO.I.H.G.S.X.
0.5976.1Zm.16834.1.A1_atAt3g28690--4e-1At1g64370unknown proteinO.I.H.G.S.X.
0.5674.4Zm.7387.1.A1_atAt3g28690--2e+1At5g18403-O.I.H.G.S.X.
0.5267.3Zm.2946.1.S1_atAt3g28690--1e+0At5g41450zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4251.3Zm.8842.1.A1_atAt3g28690hypothetical protein LOC100193075-1e+0At2g40670ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)O.I.H.G.S.X.
0.4048.5Zm.10656.1.A1_atAt3g28690hypothetical protein LOC100216802-3e+0At4g25570ACYB-2O.I.H.G.S.X.
0.3336.0Zm.625.1.S1_atAt3g28690MAP kinase phosphatase-1e-1At1g44020DC1 domain-containing proteinO.I.H.G.S.X.
0.2828.1Zm.14470.1.S1_a_atAt3g28690hypothetical protein LOC100279736 /// GTP-binding protein SAR1A-2e-19At1g09180ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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