Co-expression analysis

Gene ID	PtpAffx.97116.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g28690: protein kinase, putative (HF=1e-13)
Module size	7 genes
NF	0.26
%ile	46.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.93	PtpAffx.97116.1.S1_at	CK099593	hypothetical protein	-	1e-13	At3g28690	protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.94	Ptp.6305.2.A1_at	DN484232	hypothetical protein	-	2e-8	At1g55840	SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.94	Ptp.7603.1.S1_at	DN494879	-	-	6e-2	At1g31120	KUP10	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.93	Ptp.607.1.S1_at	CK087237	hypothetical protein	-	1e-17	At5g54680	ILR3 (iaa-leucine resistant3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.93	Ptp.788.1.S1_at	CK089255	hypothetical protein	-	2e-38	At4g38240	CGL1 (COMPLEX GLYCAN LESS 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.93	Ptp.6822.1.S1_at	DN500216	-	-	5e+0	At5g26740	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.93	PtpAffx.32281.1.A1_at	CV225439	hypothetical protein	-	2e-8	At1g67530	armadillo/beta-catenin repeat family protein / U-box domain-containing family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	97.4	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.5	97.1	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the wheat gene, Ta.12685.1.S1_at, orthologous to the query gene, PtpAffx.97116.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.4	Ta.12685.1.S1_at	At3g28690	-	-	1e-1	At2g28930	APK1B	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.30790.1.S1_a_at	At3g28690	-	-	1e-1	At1g12665	-	O.I.	H.G.	S.X.	Please select
0.60	81.0	Ta.30790.1.S1_at	At3g28690	-	-	1e-1	At1g12665	-	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.12685.1.S1_x_at	At3g28690	-	-	1e-1	At2g28930	APK1B	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.30790.2.S1_at	At3g28690	-	-	2e-1	At3g58850	PAR2 (PHY RAPIDLY REGULATED 2)	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.26378.1.A1_s_at	At3g28690	-	-	2e+0	At2g18530	protein kinase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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