CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.97116.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g28690: protein kinase, putative (HF=1e-13)

Module size 7 genes

NF 0.26

%ile 46.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 82.2 0.93 PtpAffx.97116.1.S1_at CK099593 hypothetical protein - 1e-13 At3g28690 protein kinase, putative O.I. H.G. S.X.
0.35 59.7 0.94 Ptp.6305.2.A1_at DN484232 hypothetical protein - 2e-8 At1g55840 SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein O.I. H.G. S.X.
0.31 53.7 0.94 Ptp.7603.1.S1_at DN494879 - - 6e-2 At1g31120 KUP10 O.I. H.G. S.X.
0.28 50.5 0.93 Ptp.607.1.S1_at CK087237 hypothetical protein - 1e-17 At5g54680 ILR3 (iaa-leucine resistant3) O.I. H.G. S.X.
0.19 32.7 0.93 Ptp.788.1.S1_at CK089255 hypothetical protein - 2e-38 At4g38240 CGL1 (COMPLEX GLYCAN LESS 1) O.I. H.G. S.X.
0.18 30.8 0.93 Ptp.6822.1.S1_at DN500216 - - 5e+0 At5g26740 unknown protein O.I. H.G. S.X.
0.17 29.1 0.93 PtpAffx.32281.1.A1_at CV225439 hypothetical protein - 2e-8 At1g67530 armadillo/beta-catenin repeat family protein / U-box domain-containing family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.55	82.2	0.93	PtpAffx.97116.1.S1_at	CK099593	hypothetical protein	-	1e-13	At3g28690	protein kinase, putative	O.I.	H.G.	S.X.
0.35	59.7	0.94	Ptp.6305.2.A1_at	DN484232	hypothetical protein	-	2e-8	At1g55840	SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein	O.I.	H.G.	S.X.
0.31	53.7	0.94	Ptp.7603.1.S1_at	DN494879	-	-	6e-2	At1g31120	KUP10	O.I.	H.G.	S.X.
0.28	50.5	0.93	Ptp.607.1.S1_at	CK087237	hypothetical protein	-	1e-17	At5g54680	ILR3 (iaa-leucine resistant3)	O.I.	H.G.	S.X.
0.19	32.7	0.93	Ptp.788.1.S1_at	CK089255	hypothetical protein	-	2e-38	At4g38240	CGL1 (COMPLEX GLYCAN LESS 1)	O.I.	H.G.	S.X.
0.18	30.8	0.93	Ptp.6822.1.S1_at	DN500216	-	-	5e+0	At5g26740	unknown protein	O.I.	H.G.	S.X.
0.17	29.1	0.93	PtpAffx.32281.1.A1_at	CV225439	hypothetical protein	-	2e-8	At1g67530	armadillo/beta-catenin repeat family protein / U-box domain-containing family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.9 97.4 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.5 97.1 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
5.9	97.4	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.5	97.1	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the rice gene, Os09g0361100, orthologous to the query gene, PtpAffx.97116.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.96 99.7 Os09g0361100 At3g28690 - Protein kinase APK1A (EC 2.7.1.-) 1e-70 At5g15080 protein kinase, putative O.I. H.G. S.X.
0.42 53.9 Os02g0147800 At3g28690 - Homeo protein (Fragment) 3e-1 At5g07600 oleosin / glycine-rich protein O.I. H.G. S.X.
0.40 51.1 Os02g0194000 At3g28690 - Myb, DNA-binding domain containing protein 7e-1 At4g20300 unknown protein O.I. H.G. S.X.
0.39 48.3 Os01g0521500 At3g28690 - Heat shock protein DnaJ family protein 3e-10 At1g65280 heat shock protein binding O.I. H.G. S.X.
0.39 48.3 Os08g0127300 At3g28690 - Hypothetical protein 2e-2 At5g63320 - O.I. H.G. S.X.
0.38 46.9 Os06g0713900 At3g28690 - Hypothetical protein 3e-2 At2g35960 NHL12 O.I. H.G. S.X.
0.38 46.9 Os03g0820700 At3g28690 - Gag polyprotein 8e-1 At1g75560 zinc knuckle (CCHC-type) family protein O.I. H.G. S.X.
0.36 44.0 Os03g0802800 At3g28690 - Hypothetical protein 3e+0 At5g18540 unknown protein O.I. H.G. S.X.
0.36 44.0 Os07g0167200 At3g28690 - Zinc finger POZ domain protein (Fragment) 2e-1 At3g03740 ATBPM4 (BTB-POZ and MATH domain 4) O.I. H.G. S.X.
0.35 41.7 Os06g0229300 At3g28690 - HOX1B protein 5e-7 At3g19510 HAT3.1 O.I. H.G. S.X.
0.33 38.8 Os06g0206100 At3g28690 - Protein of unknown function DUF1296 family protein 4e-4 At3g13990 unknown protein O.I. H.G. S.X.
0.33 38.8 Os08g0383700 At3g28690 - Repressor protein 4e-18 At5g23090 NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13) O.I. H.G. S.X.
0.33 38.8 Os01g0958000 At3g28690 - Cell division control protein 2 homolog 2 (EC2.7.1.37) (Fragment) 1e-21 At5g64960 CDKC2 (Cyclin dependent kinase group C 2) O.I. H.G. S.X.
0.32 36.3 Os06g0485100 At3g28690 - Conserved hypothetical protein 2e-6 At3g18380 sequence-specific DNA binding / transcription factor O.I. H.G. S.X.
0.32 36.3 Os04g0465000 At3g28690 - Sterile alpha motif SAM domain containing protein 3e+0 At3g48209 - O.I. H.G. S.X.
0.31 34.5 Os04g0672200 At3g28690 - Conserved hypothetical protein 2e-3 At2g01340 unknown protein O.I. H.G. S.X.
0.29 31.1 Os05g0196500 At3g28690 - Transcription factor jumonji, JmjN domaincontaining protein 2e-12 At1g08620 transcription factor O.I. H.G. S.X.
0.29 31.1 Os02g0480900 At3g28690 - Ataxin-2, N-terminal domain containing protein 2e+0 At2g33200 F-box family protein O.I. H.G. S.X.
0.27 27.5 Os10g0580700 At3g28690 - Ankyrin repeat containing protein 2e-4 At4g19150 ankyrin repeat family protein O.I. H.G. S.X.
0.27 27.5 Os03g0818000 At3g28690 - Conserved hypothetical protein 3e-16 At5g22060 ATJ2 O.I. H.G. S.X.
0.27 27.5 Os02g0554000 At3g28690 - CW-type Zn-finger domain containing protein 8e-1 At4g14165 F-box family protein-related O.I. H.G. S.X.
0.26 25.6 Os07g0101400 At3g28690 - MATH domain containing protein 4e-3 At3g03740 ATBPM4 (BTB-POZ and MATH domain 4) O.I. H.G. S.X.
0.26 25.6 Os05g0463800 At3g28690 - CCAAT-binding transcription factor-like protein(Fragment) 2e-16 At3g53340 NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10) O.I. H.G. S.X.
0.26 25.6 Os01g0500500 At3g28690 - Protein of unknown function DUF632 domaincontaining protein 3e-4 At1g52320 unknown protein O.I. H.G. S.X.
0.25 24.1 Os11g0573200 At3g28690 - Gag polyprotein (Fragment) 3e+0 At3g15780 unknown protein O.I. H.G. S.X.
0.25 24.1 Os06g0227200 At3g28690 - Hypothetical protein 2e+0 At1g59870 PEN3 (PENETRATION 3) O.I. H.G. S.X.
0.24 22.4 Os04g0672800 At3g28690 - Conserved hypothetical protein 3e+0 At3g21865 PEX22 (peroxin 22) O.I. H.G. S.X.
0.24 22.4 Os08g0295000 At3g28690 - Conserved hypothetical protein 5e-1 At1g76065 - O.I. H.G. S.X.
0.23 21.2 Os05g0352800 At3g28690 - Conserved hypothetical protein 2e+0 At5g25760 PEX4 (PEROXIN4) O.I. H.G. S.X.
0.22 19.4 Os06g0558700 At3g28690 - Poly(A) polymerase, RNA-binding region domaincontaining protein 6e-8 At2g25850 nucleotidyltransferase family protein O.I. H.G. S.X.
0.22 19.4 Os03g0376800 At3g28690 - KH, type 1 domain containing protein 1e+0 At3g15990 SULTR3 O.I. H.G. S.X.
0.20 16.5 Os02g0709400 At3g28690 - Dek1-calpain-like protein 8e-134 At1g55350 DEK1 (DEFECTIVE KERNEL 1) O.I. H.G. S.X.
0.16 11.3 Os10g0188300 At3g28690 - DNA polymerase, beta-like region domain containingprotein 4e-1 At4g38870 F-box family protein O.I. H.G. S.X.
0.13 8.2 Os03g0788300 At3g28690 - - 3e-2 At5g07600 oleosin / glycine-rich protein O.I. H.G. S.X.
0.13 8.2 Os07g0583700 At3g28690 - WRKY transcription factor 34 1e-21 At4g26640 WRKY20 O.I. H.G. S.X.
0.09 4.9 Os01g0111200 At3g28690 - Conserved hypothetical protein 9e-11 At1g26110 unknown protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.96	99.7	Os09g0361100	At3g28690	-	Protein kinase APK1A (EC 2.7.1.-)	1e-70	At5g15080	protein kinase, putative	O.I.	H.G.	S.X.
0.42	53.9	Os02g0147800	At3g28690	-	Homeo protein (Fragment)	3e-1	At5g07600	oleosin / glycine-rich protein	O.I.	H.G.	S.X.
0.40	51.1	Os02g0194000	At3g28690	-	Myb, DNA-binding domain containing protein	7e-1	At4g20300	unknown protein	O.I.	H.G.	S.X.
0.39	48.3	Os01g0521500	At3g28690	-	Heat shock protein DnaJ family protein	3e-10	At1g65280	heat shock protein binding	O.I.	H.G.	S.X.
0.39	48.3	Os08g0127300	At3g28690	-	Hypothetical protein	2e-2	At5g63320	-	O.I.	H.G.	S.X.
0.38	46.9	Os06g0713900	At3g28690	-	Hypothetical protein	3e-2	At2g35960	NHL12	O.I.	H.G.	S.X.
0.38	46.9	Os03g0820700	At3g28690	-	Gag polyprotein	8e-1	At1g75560	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.
0.36	44.0	Os03g0802800	At3g28690	-	Hypothetical protein	3e+0	At5g18540	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	Os07g0167200	At3g28690	-	Zinc finger POZ domain protein (Fragment)	2e-1	At3g03740	ATBPM4 (BTB-POZ and MATH domain 4)	O.I.	H.G.	S.X.
0.35	41.7	Os06g0229300	At3g28690	-	HOX1B protein	5e-7	At3g19510	HAT3.1	O.I.	H.G.	S.X.
0.33	38.8	Os06g0206100	At3g28690	-	Protein of unknown function DUF1296 family protein	4e-4	At3g13990	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	Os08g0383700	At3g28690	-	Repressor protein	4e-18	At5g23090	NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)	O.I.	H.G.	S.X.
0.33	38.8	Os01g0958000	At3g28690	-	Cell division control protein 2 homolog 2 (EC2.7.1.37) (Fragment)	1e-21	At5g64960	CDKC2 (Cyclin dependent kinase group C 2)	O.I.	H.G.	S.X.
0.32	36.3	Os06g0485100	At3g28690	-	Conserved hypothetical protein	2e-6	At3g18380	sequence-specific DNA binding / transcription factor	O.I.	H.G.	S.X.
0.32	36.3	Os04g0465000	At3g28690	-	Sterile alpha motif SAM domain containing protein	3e+0	At3g48209	-	O.I.	H.G.	S.X.
0.31	34.5	Os04g0672200	At3g28690	-	Conserved hypothetical protein	2e-3	At2g01340	unknown protein	O.I.	H.G.	S.X.
0.29	31.1	Os05g0196500	At3g28690	-	Transcription factor jumonji, JmjN domaincontaining protein	2e-12	At1g08620	transcription factor	O.I.	H.G.	S.X.
0.29	31.1	Os02g0480900	At3g28690	-	Ataxin-2, N-terminal domain containing protein	2e+0	At2g33200	F-box family protein	O.I.	H.G.	S.X.
0.27	27.5	Os10g0580700	At3g28690	-	Ankyrin repeat containing protein	2e-4	At4g19150	ankyrin repeat family protein	O.I.	H.G.	S.X.
0.27	27.5	Os03g0818000	At3g28690	-	Conserved hypothetical protein	3e-16	At5g22060	ATJ2	O.I.	H.G.	S.X.
0.27	27.5	Os02g0554000	At3g28690	-	CW-type Zn-finger domain containing protein	8e-1	At4g14165	F-box family protein-related	O.I.	H.G.	S.X.
0.26	25.6	Os07g0101400	At3g28690	-	MATH domain containing protein	4e-3	At3g03740	ATBPM4 (BTB-POZ and MATH domain 4)	O.I.	H.G.	S.X.
0.26	25.6	Os05g0463800	At3g28690	-	CCAAT-binding transcription factor-like protein(Fragment)	2e-16	At3g53340	NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10)	O.I.	H.G.	S.X.
0.26	25.6	Os01g0500500	At3g28690	-	Protein of unknown function DUF632 domaincontaining protein	3e-4	At1g52320	unknown protein	O.I.	H.G.	S.X.
0.25	24.1	Os11g0573200	At3g28690	-	Gag polyprotein (Fragment)	3e+0	At3g15780	unknown protein	O.I.	H.G.	S.X.
0.25	24.1	Os06g0227200	At3g28690	-	Hypothetical protein	2e+0	At1g59870	PEN3 (PENETRATION 3)	O.I.	H.G.	S.X.
0.24	22.4	Os04g0672800	At3g28690	-	Conserved hypothetical protein	3e+0	At3g21865	PEX22 (peroxin 22)	O.I.	H.G.	S.X.
0.24	22.4	Os08g0295000	At3g28690	-	Conserved hypothetical protein	5e-1	At1g76065	-	O.I.	H.G.	S.X.
0.23	21.2	Os05g0352800	At3g28690	-	Conserved hypothetical protein	2e+0	At5g25760	PEX4 (PEROXIN4)	O.I.	H.G.	S.X.
0.22	19.4	Os06g0558700	At3g28690	-	Poly(A) polymerase, RNA-binding region domaincontaining protein	6e-8	At2g25850	nucleotidyltransferase family protein	O.I.	H.G.	S.X.
0.22	19.4	Os03g0376800	At3g28690	-	KH, type 1 domain containing protein	1e+0	At3g15990	SULTR3	O.I.	H.G.	S.X.
0.20	16.5	Os02g0709400	At3g28690	-	Dek1-calpain-like protein	8e-134	At1g55350	DEK1 (DEFECTIVE KERNEL 1)	O.I.	H.G.	S.X.
0.16	11.3	Os10g0188300	At3g28690	-	DNA polymerase, beta-like region domain containingprotein	4e-1	At4g38870	F-box family protein	O.I.	H.G.	S.X.
0.13	8.2	Os03g0788300	At3g28690	-	-	3e-2	At5g07600	oleosin / glycine-rich protein	O.I.	H.G.	S.X.
0.13	8.2	Os07g0583700	At3g28690	-	WRKY transcription factor 34	1e-21	At4g26640	WRKY20	O.I.	H.G.	S.X.
0.09	4.9	Os01g0111200	At3g28690	-	Conserved hypothetical protein	9e-11	At1g26110	unknown protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	PtpAffx.97116.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g28690: protein kinase, putative (HF=1e-13)
Module size	7 genes
NF	0.26
%ile	46.2

Co-expression analysis

Gene ID PtpAffx.97116.1.S1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At3g28690: protein kinase, putative (HF=1e-13) Module size 7 genes NF 0.26 %ile 46.2

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.97116.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g28690: protein kinase, putative (HF=1e-13)

Module size 7 genes

NF 0.26

%ile 46.2

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays