CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.97116.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g28690: protein kinase, putative (HF=1e-13)

Module size 7 genes

NF 0.26

%ile 46.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 82.2 0.93 PtpAffx.97116.1.S1_at CK099593 hypothetical protein - 1e-13 At3g28690 protein kinase, putative O.I. H.G. S.X.
0.35 59.7 0.94 Ptp.6305.2.A1_at DN484232 hypothetical protein - 2e-8 At1g55840 SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein O.I. H.G. S.X.
0.31 53.7 0.94 Ptp.7603.1.S1_at DN494879 - - 6e-2 At1g31120 KUP10 O.I. H.G. S.X.
0.28 50.5 0.93 Ptp.607.1.S1_at CK087237 hypothetical protein - 1e-17 At5g54680 ILR3 (iaa-leucine resistant3) O.I. H.G. S.X.
0.19 32.7 0.93 Ptp.788.1.S1_at CK089255 hypothetical protein - 2e-38 At4g38240 CGL1 (COMPLEX GLYCAN LESS 1) O.I. H.G. S.X.
0.18 30.8 0.93 Ptp.6822.1.S1_at DN500216 - - 5e+0 At5g26740 unknown protein O.I. H.G. S.X.
0.17 29.1 0.93 PtpAffx.32281.1.A1_at CV225439 hypothetical protein - 2e-8 At1g67530 armadillo/beta-catenin repeat family protein / U-box domain-containing family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.9 97.4 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.5 97.1 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g28690, orthologous to the query gene, PtpAffx.97116.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.53 68.6 At3g28690 822499 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.50 65.3 At1g18470 838427 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;MPOVF O.I. H.G. S.X.
0.33 38.1 At5g42870 834298 lipin family protein F:unknown;P:biological_process unknown;C:apoplast, membrane;MFBOP O.I. H.G. S.X.
0.29 30.3 At1g68820 843214 membrane protein, putative F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPVF O.I. H.G. S.X.
0.18 11.4 At3g10250 820187 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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