Co-expression analysis

Gene ID PtpAffx.95850.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g25560: zinc finger (C3HC4-type RING finger) family protein (HF=4e-1)
Module size 6 genes
NF 0.46
%ile 75.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4774.60.84PtpAffx.95850.1.A1_atCV230444hypothetical protein-4e-1At5g25560zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6791.10.89PtpAffx.224715.1.S1_s_atpmrna43527hypothetical protein-4e-25At1g11300ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingO.I.H.G.S.X.
0.5078.60.88PtpAffx.160277.1.A1_atCV262870hypothetical protein-3e+0At4g27930unknown proteinO.I.H.G.S.X.
0.4067.00.91PtpAffx.212465.1.S1_atpmrna24423hypothetical protein-2e+0At5g35945unknown proteinO.I.H.G.S.X.
0.3357.50.89PtpAffx.214372.1.S1_atpmrna27964hypothetical protein-2e+0At3g28140calmodulin-binding proteinO.I.H.G.S.X.
0.3255.20.87PtpAffx.63756.2.S1_atCV274245--3e-1At5g09260VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.697.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.494.0GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.886.4GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.785.5GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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