CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.95587.1.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g53280: PDV1 (PLASTID DIVISION1) (HF=1e+0)

Module size 6 genes

NF 0.51

%ile 82.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.89 PtpAffx.95587.1.A1_at CV240701 hypothetical protein - 1e+0 At5g53280 PDV1 (PLASTID DIVISION1) O.I. H.G. S.X.
0.60 86.0 0.92 PtpAffx.219974.1.S1_at pmrna36177 hypothetical protein - 2e-3 At2g45040 matrix metalloproteinase O.I. H.G. S.X.
0.55 82.2 0.89 PtpAffx.953.2.A1_at CV276105 - - 1e+0 At4g21580 oxidoreductase, zinc-binding dehydrogenase family protein O.I. H.G. S.X.
0.46 73.7 0.90 PtpAffx.8582.1.S1_at CV262556 - - 2e-1 At1g19310 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.40 67.0 0.89 PtpAffx.213042.1.S1_at pmrna25523 hypothetical protein - 7e-15 At5g51780 basix helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.30 52.0 0.90 PtpAffx.84979.1.S1_at CV254755 hypothetical protein - 2e-4 At5g06720 peroxidase, putative O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	91.1	0.89	PtpAffx.95587.1.A1_at	CV240701	hypothetical protein	-	1e+0	At5g53280	PDV1 (PLASTID DIVISION1)	O.I.	H.G.	S.X.
0.60	86.0	0.92	PtpAffx.219974.1.S1_at	pmrna36177	hypothetical protein	-	2e-3	At2g45040	matrix metalloproteinase	O.I.	H.G.	S.X.
0.55	82.2	0.89	PtpAffx.953.2.A1_at	CV276105	-	-	1e+0	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.
0.46	73.7	0.90	PtpAffx.8582.1.S1_at	CV262556	-	-	2e-1	At1g19310	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.40	67.0	0.89	PtpAffx.213042.1.S1_at	pmrna25523	hypothetical protein	-	7e-15	At5g51780	basix helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.30	52.0	0.90	PtpAffx.84979.1.S1_at	CV254755	hypothetical protein	-	2e-4	At5g06720	peroxidase, putative	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	91.1	0.88	PtpAffx.224607.1.S1_s_at	pmrna43301	predicted small molecule transporter /// pho1-like protein	-	8e-45	At3g23430	PHO1 (phosphate 1)	O.I.	H.G.	S.X.
0.60	86.0	0.86	PtpAffx.115091.1.A1_at	CV267661	NAC domain protein, IPR003441	-	2e+0	At5g14660	PDF1B (PEPTIDE DEFORMYLASE 1B)	O.I.	H.G.	S.X.
0.53	80.5	0.85	PtpAffx.54686.1.A1_at	DN492095	-	-	8e-1	At5g23740	RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA)	O.I.	H.G.	S.X.
0.50	78.6	0.85	PtpAffx.225782.1.S1_at	pmrna45373	hypothetical protein	-	1e-2	At4g20860	FAD-binding domain-containing protein	O.I.	H.G.	S.X.
0.50	78.6	0.87	PtpAffx.953.3.S1_at	CA825166	-	-	1e+0	At1g74620	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.46	73.7	0.88	PtpAffx.203014.1.S1_at	pmrna5962	hypothetical protein	-	5e+0	At4g13965	-	O.I.	H.G.	S.X.
0.44	71.9	0.91	PtpAffx.39799.1.A1_at	CV228717	hypothetical protein	-	6e-1	At5g19810	proline-rich extensin-like family protein	O.I.	H.G.	S.X.
0.44	71.9	0.92	Ptp.3600.1.S1_s_at	AF273256.1	sinapyl alcohol dehydrogenase	-	5e-5	At4g37980	ELI3-1 (ELICITOR-ACTIVATED GENE 3-1)	O.I.	H.G.	S.X.
0.42	68.6	0.88	PtpAffx.210935.1.S1_at	pmrna21488	hypothetical protein	-	1e-5	At3g05400	sugar transporter, putative	O.I.	H.G.	S.X.
0.40	67.0	0.89	Ptp.7418.1.S1_at	CV265011	hypothetical protein	-	2e+0	At5g51520	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.
0.36	61.6	0.85	PtpAffx.160277.1.A1_at	CV262870	hypothetical protein	-	3e+0	At4g27930	unknown protein	O.I.	H.G.	S.X.
0.33	57.5	0.88	PtpAffx.225830.1.S1_at	pmrna45443	hypothetical protein	-	5e-4	At1g78320	ATGSTU23 (GLUTATHIONE S-TRANSFERASE TAU 23)	O.I.	H.G.	S.X.
0.33	57.5	0.89	Ptp.3600.1.S1_at	AF273256.1	sinapyl alcohol dehydrogenase	-	5e-5	At4g37980	ELI3-1 (ELICITOR-ACTIVATED GENE 3-1)	O.I.	H.G.	S.X.
0.32	55.2	0.86	PtpAffx.214372.1.S1_at	pmrna27964	hypothetical protein	-	2e+0	At3g28140	calmodulin-binding protein	O.I.	H.G.	S.X.
0.32	55.2	0.87	PtpAffx.221199.1.S1_at	pmrna37897	hypothetical protein	-	8e+0	At4g31460	ribosomal protein L28 family protein	O.I.	H.G.	S.X.
0.31	53.7	0.85	Ptp.6183.1.S1_at	CV254565	hypothetical protein	-	3e-5	At5g06570	hydrolase	O.I.	H.G.	S.X.
0.31	53.7	0.89	PtpAffx.220523.1.S1_at	pmrna36924	hypothetical protein	-	7e-1	At2g23610	MES3 (METHYL ESTERASE 3)	O.I.	H.G.	S.X.
0.31	53.7	0.89	PtpAffx.123468.1.S1_at	CA825441	hypothetical protein	-	1e-9	At5g05960	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.30	52.0	0.87	PtpAffx.38961.1.S1_at	AB030083.1	hypothetical protein	-	2e-2	At4g23180	CRK10 (CYSTEINE-RICH RLK10)	O.I.	H.G.	S.X.
0.29	50.5	0.88	PtpAffx.208471.1.S1_at	pmrna16831	hypothetical protein	-	8e-22	At3g06850	BCE2	O.I.	H.G.	S.X.
0.29	50.5	0.88	PtpAffx.201944.1.S1_at	pmrna3878	hypothetical protein	-	7e-2	At1g77030	ATP binding / ATP-dependent helicase/ RNA binding / helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding	O.I.	H.G.	S.X.
0.29	50.5	0.89	PtpAffx.210555.1.S1_at	pmrna20709	hypothetical protein	-	4e-16	At1g23870	ATTPS9	O.I.	H.G.	S.X.
0.27	47.1	0.84	PtpAffx.207235.1.S1_at	pmrna14343	cytokinin oxidase	-	7e-1	At4g29740	CKX4 (CYTOKININ OXIDASE 4)	O.I.	H.G.	S.X.
0.27	47.1	0.88	PtpAffx.82382.1.A1_at	CV262006	hypothetical protein	-	3e-2	At2g31940	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.79	PtpAffx.222290.1.S1_s_at	pmrna39606	hypothetical protein	-	3e+0	At1g53910	RAP2.12	O.I.	H.G.	S.X.
0.25	43.6	0.83	PtpAffx.225583.1.S1_at	pmrna45028	hypothetical protein	-	4e-9	At2g26560	PLA2A (PHOSPHOLIPASE A 2A)	O.I.	H.G.	S.X.
0.25	43.6	0.84	PtpAffx.7681.3.A1_x_at	CV266475	aquaporin, MIP family, PIP subfamily	-	3e-36	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	O.I.	H.G.	S.X.
0.25	43.6	0.88	PtpAffx.114935.1.A1_at	CV240866	hypothetical protein	-	2e-2	At3g46620	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.25	43.6	0.88	PtpAffx.204601.1.S1_at	pmrna9035	hypothetical protein	-	2e+0	At5g52750	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.1 96.8 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.4 95.9 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.0 95.3 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.8 92.1 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
5.1	96.8	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.0	95.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.8	92.1	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	PtpAffx.95587.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g53280: PDV1 (PLASTID DIVISION1) (HF=1e+0)
Module size	6 genes
NF	0.51
%ile	82.0

Co-expression analysis

Gene ID PtpAffx.95587.1.A1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At5g53280: PDV1 (PLASTID DIVISION1) (HF=1e+0) Module size 6 genes NF 0.51 %ile 82.0

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.95587.1.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g53280: PDV1 (PLASTID DIVISION1) (HF=1e+0)

Module size 6 genes

NF 0.51

%ile 82.0

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays