Co-expression analysis

Gene ID	PtpAffx.95587.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g53280: PDV1 (PLASTID DIVISION1) (HF=1e+0)
Module size	6 genes
NF	0.51
%ile	82.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.89	PtpAffx.95587.1.A1_at	CV240701	hypothetical protein	-	1e+0	At5g53280	PDV1 (PLASTID DIVISION1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.92	PtpAffx.219974.1.S1_at	pmrna36177	hypothetical protein	-	2e-3	At2g45040	matrix metalloproteinase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.89	PtpAffx.953.2.A1_at	CV276105	-	-	1e+0	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.90	PtpAffx.8582.1.S1_at	CV262556	-	-	2e-1	At1g19310	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.89	PtpAffx.213042.1.S1_at	pmrna25523	hypothetical protein	-	7e-15	At5g51780	basix helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.90	PtpAffx.84979.1.S1_at	CV254755	hypothetical protein	-	2e-4	At5g06720	peroxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	96.8	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.0	95.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.8	92.1	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the maize gene, Zm.17731.1.S1_at, orthologous to the query gene, PtpAffx.95587.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	Zm.17731.1.S1_at	At5g53280	-	-	2e+0	At5g51760	AHG1 (ABA-hypersensitive germination 1)	O.I.	H.G.	S.X.	Please select
0.59	76.1	Zm.9456.1.A1_at	At5g53280	hypothetical protein LOC100191738	-	5e+0	At4g28020	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.13188.1.A1_at	At5g53280	Hypothetical protein LOC100193556	-	5e-32	At3g11940	ATRPS5A (RIBOSOMAL PROTEIN 5A)	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.1801.1.S1_at	At5g53280	hypothetical protein LOC100193039	-	2e-1	At5g46780	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.17349.1.S1_at	At5g53280	Hypothetical protein LOC100191394	-	4e+0	At5g56880	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	Zm.16724.1.A1_at	At5g53280	Histone H4	-	2e-8	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage