Co-expression analysis

Gene ID	PtpAffx.95587.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g53280: PDV1 (PLASTID DIVISION1) (HF=1e+0)
Module size	6 genes
NF	0.51
%ile	82.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.89	PtpAffx.95587.1.A1_at	CV240701	hypothetical protein	-	1e+0	At5g53280	PDV1 (PLASTID DIVISION1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.92	PtpAffx.219974.1.S1_at	pmrna36177	hypothetical protein	-	2e-3	At2g45040	matrix metalloproteinase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.89	PtpAffx.953.2.A1_at	CV276105	-	-	1e+0	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.90	PtpAffx.8582.1.S1_at	CV262556	-	-	2e-1	At1g19310	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.89	PtpAffx.213042.1.S1_at	pmrna25523	hypothetical protein	-	7e-15	At5g51780	basix helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.90	PtpAffx.84979.1.S1_at	CV254755	hypothetical protein	-	2e-4	At5g06720	peroxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	96.8	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.0	95.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.8	92.1	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the grape gene, 1608104_at, orthologous to the query gene, PtpAffx.95587.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	92.6	1608104_at	At5g53280	hypothetical protein LOC100249896	-	1e+0	At3g46640	PCL1 (PHYTOCLOCK 1)	O.I.	H.G.	S.X.	Please select
0.55	77.3	1611449_at	At5g53280	hypothetical protein LOC100251803	-	6e-9	At5g47710	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	1610976_s_at	At5g53280	hypothetical protein LOC100249497	-	2e-2	At2g38000	chaperone protein dnaJ-related	O.I.	H.G.	S.X.	Please select
0.47	67.7	1621878_at	At5g53280	alpha-soluble NSF attachment protein	-	1e-26	At3g56190	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.42	60.1	1613994_at	At5g53280	hypothetical protein LOC100260766	-	6e-21	At2g31090	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	1614591_at	At5g53280	hypothetical protein LOC100254924	-	7e-19	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	O.I.	H.G.	S.X.	Please select
0.41	58.7	1607007_at	At5g53280	hypothetical protein LOC100243041	-	3e-2	At2g38450	-	O.I.	H.G.	S.X.	Please select
0.40	57.7	1621118_s_at	At5g53280	hypothetical protein LOC100247365	-	9e+0	At2g27080	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.40	57.7	1612136_at	At5g53280	-	-	3e-17	At5g55850	NOI	O.I.	H.G.	S.X.	Please select
0.39	54.9	1610145_at	At5g53280	hypothetical protein LOC100245875	-	6e-10	At4g19110	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.38	53.6	1615588_at	At5g53280	hypothetical protein LOC100241835	-	1e-17	At3g62580	-	O.I.	H.G.	S.X.	Please select
0.35	48.5	1615976_at	At5g53280	hypothetical protein LOC100247651	-	2e-113	At2g33150	PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3)	O.I.	H.G.	S.X.	Please select
0.35	48.5	1607243_at	At5g53280	hypothetical protein LOC100253217	-	4e-72	At2g25610	H+-transporting two-sector ATPase, C subunit family protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	1608130_at	At5g53280	hypothetical protein LOC100248764	-	2e-4	At3g57030	strictosidine synthase family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	1620143_at	At5g53280	hypothetical protein LOC100248167	-	1e+0	At4g03290	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.26	32.0	1612799_at	At5g53280	hypothetical protein LOC100264088	-	9e-31	At3g05010	transmembrane protein, putative	O.I.	H.G.	S.X.	Please select
0.24	28.7	1621389_at	At5g53280	hypothetical protein LOC100243473	-	1e-43	At2g34470	UREG (UREASE ACCESSORY PROTEIN G)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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