CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.95587.1.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g53280: PDV1 (PLASTID DIVISION1) (HF=1e+0)

Module size 6 genes

NF 0.51

%ile 82.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.89 PtpAffx.95587.1.A1_at CV240701 hypothetical protein - 1e+0 At5g53280 PDV1 (PLASTID DIVISION1) O.I. H.G. S.X.
0.60 86.0 0.92 PtpAffx.219974.1.S1_at pmrna36177 hypothetical protein - 2e-3 At2g45040 matrix metalloproteinase O.I. H.G. S.X.
0.55 82.2 0.89 PtpAffx.953.2.A1_at CV276105 - - 1e+0 At4g21580 oxidoreductase, zinc-binding dehydrogenase family protein O.I. H.G. S.X.
0.46 73.7 0.90 PtpAffx.8582.1.S1_at CV262556 - - 2e-1 At1g19310 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.40 67.0 0.89 PtpAffx.213042.1.S1_at pmrna25523 hypothetical protein - 7e-15 At5g51780 basix helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.30 52.0 0.90 PtpAffx.84979.1.S1_at CV254755 hypothetical protein - 2e-4 At5g06720 peroxidase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.1 96.8 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.4 95.9 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.0 95.3 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.8 92.1 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the rice gene, Os11g0417066, orthologous to the query gene, PtpAffx.95587.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 Os11g0417066 At5g53280 - - 1e-1 At5g22930 unknown protein O.I. H.G. S.X.
0.46 60.9 Os05g0575200 At5g53280 - - 9e-1 At2g32600 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.31 34.5 Os09g0538900 At5g53280 - Conserved hypothetical protein 1e+0 At5g64090 - O.I. H.G. S.X.
0.14 9.3 Os12g0108300 At5g53280 - - 9e+0 At4g11485 LCR11 (Low-molecular-weight cysteine-rich 11) O.I. H.G. S.X.
0.11 6.5 Os12g0143600 At5g53280 - - 3e+0 At1g67035 unknown protein O.I. H.G. S.X.
0.10 5.7 Os11g0176500 At5g53280 - - 5e-1 At1g26945 KDR (KIDARI) O.I. H.G. S.X.
0.07 3.7 Os05g0184666 At5g53280 - - 2e+0 At5g38220 hydrolase O.I. H.G. S.X.
0.02 1.0 Os05g0480500 At5g53280 - Hypothetical protein 1e+0 At5g45860 Bet v I allergen family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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