Co-expression analysis

Gene ID	PtpAffx.95500.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g38140: NF-YC12 (NUCLEAR FACTOR Y, SUBUNIT C12) (HF=1e+0)
Module size	7 genes
NF	0.49
%ile	79.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	71.9	0.84	PtpAffx.95500.1.A1_at	CV243681	-	-	1e+0	At5g38140	NF-YC12 (NUCLEAR FACTOR Y, SUBUNIT C12)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.87	PtpAffx.224082.1.S1_x_at	pmrna42319	hypothetical protein	-	1e-2	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.88	PtpAffx.88903.1.A1_at	CV247217	hypothetical protein	-	9e-1	At2g01770	VIT1 (vacuolar iron transporter 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.88	PtpAffx.217474.1.S1_at	pmrna32753	hypothetical protein	-	7e+0	At3g18295	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.86	Ptp.3190.3.A1_at	CV229036	-	-	7e-1	At1g50930	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.85	PtpAffx.213520.1.S1_at	pmrna26425	hypothetical protein	-	5e+0	At5g64470	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.87	Ptp.2652.1.A1_at	CV251557	hypothetical protein	-	2e-9	At2g46540	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	96.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8	86.4	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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