Co-expression analysis

Gene ID	PtpAffx.953.3.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g74620: zinc finger (C3HC4-type RING finger) family protein (HF=1e+0)
Module size	11 genes
NF	0.54
%ile	84.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.62	87.2	0.84	PtpAffx.953.3.S1_at	CA825166	-	-	1e+0	At1g74620	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.70	91.7	0.88	PtpAffx.39799.1.A1_at	CV228717	hypothetical protein	-	6e-1	At5g19810	proline-rich extensin-like family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.88	PtpAffx.210935.1.S1_at	pmrna21488	hypothetical protein	-	1e-5	At3g05400	sugar transporter, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.88	PtpAffx.225830.1.S1_at	pmrna45443	hypothetical protein	-	5e-4	At1g78320	ATGSTU23 (GLUTATHIONE S-TRANSFERASE TAU 23)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.58	84.2	0.89	PtpAffx.213042.1.S1_at	pmrna25523	hypothetical protein	-	7e-15	At5g51780	basix helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.88	PtpAffx.82382.1.A1_at	CV262006	hypothetical protein	-	3e-2	At2g31940	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.87	PtpAffx.114935.1.A1_at	CV240866	hypothetical protein	-	2e-2	At3g46620	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.89	PtpAffx.149510.2.S1_at	CA821947	-	-	7e+0	At2g47360	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.86	PtpAffx.95587.1.A1_at	CV240701	hypothetical protein	-	1e+0	At5g53280	PDV1 (PLASTID DIVISION1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.92	PtpAffx.219974.1.S1_at	pmrna36177	hypothetical protein	-	2e-3	At2g45040	matrix metalloproteinase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.88	PtpAffx.8582.1.S1_at	CV262556	-	-	2e-1	At1g19310	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.3	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.6	97.2	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.1	95.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.5	94.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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