Co-expression analysis

Gene ID	PtpAffx.953.2.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g21580: oxidoreductase, zinc-binding dehydrogenase family protein (HF=1e+0)
Module size	6 genes
NF	0.47
%ile	76.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.88	PtpAffx.953.2.A1_at	CV276105	-	-	1e+0	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.88	PtpAffx.203014.1.S1_at	pmrna5962	hypothetical protein	-	5e+0	At4g13965	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.90	PtpAffx.95587.1.A1_at	CV240701	hypothetical protein	-	1e+0	At5g53280	PDV1 (PLASTID DIVISION1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.90	PtpAffx.219974.1.S1_at	pmrna36177	hypothetical protein	-	2e-3	At2g45040	matrix metalloproteinase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.90	PtpAffx.84979.1.S1_at	CV254755	hypothetical protein	-	2e-4	At5g06720	peroxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.88	PtpAffx.75804.1.A1_at	CV256857	hypothetical protein	-	7e-6	At2g36750	UGT73C1 (UDP-GLUCOSYL TRANSFERASE 73C1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	96.1	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.1	95.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6	91.3	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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