Co-expression analysis

Gene ID PtpAffx.953.2.A1_a_at
Gene name
Homology with ArabidopsisSimilar to At4g21580: oxidoreductase, zinc-binding dehydrogenase family protein (HF=1e+0)
Module size 6 genes
NF 0.55
%ile 85.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7393.60.92PtpAffx.953.2.A1_a_atCV276105--1e+0At4g21580oxidoreductase, zinc-binding dehydrogenase family proteinO.I.H.G.S.X.
0.7192.60.90PtpAffx.221583.1.S1_atpmrna38538nbs-lrr resistance protein-9e-1At2g38790unknown proteinO.I.H.G.S.X.
0.6187.00.93PtpAffx.91700.2.S1_atCV273319hypothetical protein-1e-19At4g38470protein kinase family proteinO.I.H.G.S.X.
0.4471.90.93PtpAffx.2522.1.A1_a_atM25337.1hypothetical protein-9e+0At5g6307040S ribosomal protein S15, putativeO.I.H.G.S.X.
0.4067.00.93PtpAffx.205011.1.S1_atpmrna9914hypothetical protein-2e-3At4g25310oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.2238.30.95PtpAffx.214538.1.S1_s_atpmrna28252hypothetical protein-5e+0At3g62320nucleic acid bindingO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7192.60.85PtpAffx.6791.1.A1_atCV275480hypothetical protein-2e-9At1g78380ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19)O.I.H.G.S.X.
0.6086.00.90PtpAffx.5270.1.A1_atDN500945hypothetical protein-6e+0At5g36001-O.I.H.G.S.X.
0.5784.20.88PtpAffx.224823.1.S1_atpmrna43694hypothetical protein-2e-3At1g29730ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.4471.90.91PtpAffx.225230.1.S1_atpmrna44421hypothetical protein-4e-19At4g27290ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingO.I.H.G.S.X.
0.3863.70.88PtpAffx.147036.1.A1_atCV253958--3e-1At3g20610non-race specific disease resistance protein, putativeO.I.H.G.S.X.
0.3863.70.88PtpAffx.215146.1.S1_atpmrna29176cationic amino acid transporter-7e-1At1g45230defective chloroplasts and leaves protein-related / DCL protein-relatedO.I.H.G.S.X.
0.3357.50.96PtpAffx.88270.1.A1_atCV274076--1e-1At1g08080ACA7 (ALPHA CARBONIC ANHYDRASE 7)O.I.H.G.S.X.
0.3153.70.84PtpAffx.209409.1.S1_atpmrna18636hypothetical protein-2e+0At1g14060-O.I.H.G.S.X.
0.3153.70.91PtpAffx.218414.1.S1_atpmrna34020hypothetical protein-2e+0At5g26100unknown proteinO.I.H.G.S.X.
0.3052.00.87PtpAffx.216797.1.S1_atpmrna31816hypothetical protein-6e-13At5g20400oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.2747.10.86PtpAffx.224715.1.S1_s_atpmrna43527hypothetical protein-4e-25At1g11300ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingO.I.H.G.S.X.
0.2543.60.90PtpAffx.211052.1.S1_atpmrna21712--3e-25At5g18270ANAC087O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.499.4GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
7.298.1GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
5.497.0GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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