Co-expression analysis

Gene ID	PtpAffx.953.2.A1_a_at
Gene name
Homology with Arabidopsis	Similar to At4g21580: oxidoreductase, zinc-binding dehydrogenase family protein (HF=1e+0)
Module size	6 genes
NF	0.55
%ile	85.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.92	PtpAffx.953.2.A1_a_at	CV276105	-	-	1e+0	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.90	PtpAffx.221583.1.S1_at	pmrna38538	nbs-lrr resistance protein	-	9e-1	At2g38790	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.93	PtpAffx.91700.2.S1_at	CV273319	hypothetical protein	-	1e-19	At4g38470	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.93	PtpAffx.2522.1.A1_a_at	M25337.1	hypothetical protein	-	9e+0	At5g63070	40S ribosomal protein S15, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.93	PtpAffx.205011.1.S1_at	pmrna9914	hypothetical protein	-	2e-3	At4g25310	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.95	PtpAffx.214538.1.S1_s_at	pmrna28252	hypothetical protein	-	5e+0	At3g62320	nucleic acid binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.4	99.4	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
7.2	98.1	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.4	97.0	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.1	96.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the grape gene, 1618018_at, orthologous to the query gene, PtpAffx.953.2.A1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	93.6	1618018_at	At4g21580	hypothetical protein LOC100257171	-	4e+0	At4g21570	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	1614059_at	At4g21580	-	-	5e-18	At4g21960	PRXR1	O.I.	H.G.	S.X.	Please select
0.40	57.7	1617993_at	At4g21580	-	-	1e-19	At2g20860	LIP1 (LIPOIC ACID SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.31	41.3	1621507_s_at	At4g21580	GAI1	-	6e-5	At3g03450	RGL2 (RGA-LIKE 2)	O.I.	H.G.	S.X.	Please select
0.18	19.4	1622416_at	At4g21580	hypothetical protein LOC100261985	-	9e-2	At5g01870	lipid transfer protein, putative	O.I.	H.G.	S.X.	Please select
0.05	6.0	1619601_at	At4g21580	hypothetical protein LOC100248187	-	2e-24	At3g10330	transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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