Co-expression analysis

Gene ID	PtpAffx.953.2.A1_a_at
Gene name
Homology with Arabidopsis	Similar to At4g21580: oxidoreductase, zinc-binding dehydrogenase family protein (HF=1e+0)
Module size	6 genes
NF	0.55
%ile	85.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.92	PtpAffx.953.2.A1_a_at	CV276105	-	-	1e+0	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.90	PtpAffx.221583.1.S1_at	pmrna38538	nbs-lrr resistance protein	-	9e-1	At2g38790	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.93	PtpAffx.91700.2.S1_at	CV273319	hypothetical protein	-	1e-19	At4g38470	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.93	PtpAffx.2522.1.A1_a_at	M25337.1	hypothetical protein	-	9e+0	At5g63070	40S ribosomal protein S15, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.93	PtpAffx.205011.1.S1_at	pmrna9914	hypothetical protein	-	2e-3	At4g25310	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.95	PtpAffx.214538.1.S1_s_at	pmrna28252	hypothetical protein	-	5e+0	At3g62320	nucleic acid binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.4	99.4	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
7.2	98.1	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.4	97.0	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.1	96.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the barley gene, Contig24614_at, orthologous to the query gene, PtpAffx.953.2.A1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	95.7	Contig24614_at	At4g21580	-	-	6e-2	At1g47970	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	Contig235_at	At4g21580	-	-	7e-35	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig17539_at	At4g21580	-	-	5e-41	At3g02460	plant adhesion molecule, putative	O.I.	H.G.	S.X.	Please select
0.41	53.9	Contig12308_at	At4g21580	-	-	1e-5	At3g23530	cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig6884_s_at	At4g21580	-	-	9e-5	At4g34100	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig11632_at	At4g21580	-	-	4e-2	At2g37080	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.37	47.9	Contig16518_at	At4g21580	-	-	7e+0	Atmg00070	-	O.I.	H.G.	S.X.	Please select
0.37	47.9	HVSMEg0010L05r2_at	At4g21580	-	-	2e+0	At2g45610	hydrolase	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig16255_s_at	At4g21580	-	-	2e-11	At3g46590	TRFL1 (TRF-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig10225_s_at	At4g21580	-	-	4e+0	At5g09490	40S ribosomal protein S15 (RPS15B)	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig10032_at	At4g21580	-	-	7e-3	At5g09850	transcription elongation factor-related	O.I.	H.G.	S.X.	Please select
0.33	42.6	EBro03_SQ008_H22_at	At4g21580	-	-	4e-6	At4g32605	-	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig5857_at	At4g21580	-	-	2e-1	At1g02965	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig1493_at	At4g21580	-	-	8e-12	At4g25740	40S ribosomal protein S10 (RPS10A)	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig6509_at	At4g21580	-	-	4e-21	At5g12040	carbon-nitrogen hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig17612_at	At4g21580	-	-	1e+0	At1g01910	anion-transporting ATPase, putative	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig14530_at	At4g21580	-	-	2e+0	At1g10820	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig1701_s_at	At4g21580	-	-	9e-5	At1g20440	COR47 (COLD-REGULATED 47)	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig8943_at	At4g21580	-	-	1e-6	At1g75990	26S proteasome regulatory subunit S3, putative (RPN3)	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig11784_at	At4g21580	-	-	3e+0	At4g31441	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig4715_at	At4g21580	-	-	1e+0	At4g10810	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig1517_at	At4g21580	-	-	2e-2	At5g39120	germin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig9332_at	At4g21580	-	-	6e+0	At3g01470	ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1)	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig17063_at	At4g21580	-	-	5e-16	At1g65650	UCH2	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig10520_s_at	At4g21580	-	-	3e-1	At4g39990	RABA4B (RAB GTPASE HOMOLOG A4B)	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig6546_at	At4g21580	-	-	8e+0	At5g02780	In2-1 protein, putative	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig6545_at	At4g21580	-	-	1e-2	At1g14250	nucleoside phosphatase family protein / GDA1/CD39 family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig7954_at	At4g21580	-	-	1e-1	At4g36900	RAP2.10 (related to AP2 10)	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig17683_at	At4g21580	-	-	2e+0	At3g11730	ATFP8	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig6264_at	At4g21580	-	-	2e-5	At3g11330	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig23996_at	At4g21580	-	-	6e-9	At4g39970	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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