Co-expression analysis

Gene ID PtpAffx.953.2.A1_a_at
Gene name
Homology with ArabidopsisSimilar to At4g21580: oxidoreductase, zinc-binding dehydrogenase family protein (HF=1e+0)
Module size 6 genes
NF 0.55
%ile 85.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7393.60.92PtpAffx.953.2.A1_a_atCV276105--1e+0At4g21580oxidoreductase, zinc-binding dehydrogenase family proteinO.I.H.G.S.X.
0.7192.60.90PtpAffx.221583.1.S1_atpmrna38538nbs-lrr resistance protein-9e-1At2g38790unknown proteinO.I.H.G.S.X.
0.6187.00.93PtpAffx.91700.2.S1_atCV273319hypothetical protein-1e-19At4g38470protein kinase family proteinO.I.H.G.S.X.
0.4471.90.93PtpAffx.2522.1.A1_a_atM25337.1hypothetical protein-9e+0At5g6307040S ribosomal protein S15, putativeO.I.H.G.S.X.
0.4067.00.93PtpAffx.205011.1.S1_atpmrna9914hypothetical protein-2e-3At4g25310oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.2238.30.95PtpAffx.214538.1.S1_s_atpmrna28252hypothetical protein-5e+0At3g62320nucleic acid bindingO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.499.4GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
7.298.1GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
5.497.0GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.7129.1.S1_at, orthologous to the query gene, PtpAffx.953.2.A1_a_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.6Gma.7129.1.S1_atAt4g21580--1e+0At2g20620unknown proteinO.I.H.G.S.X.
0.5778.8Gma.5395.1.S1_s_atAt4g21580--3e+0At5g41600BTI3 (VIRB2-INTERACTING PROTEIN 3)O.I.H.G.S.X.
0.4259.3Gma.8571.1.S1_atAt4g21580--3e+0At4g14785SCRL23 (SCR-Like 23)O.I.H.G.S.X.
0.4057.1Gma.6773.1.S1_atAt4g21580--3e-1At1g58070unknown proteinO.I.H.G.S.X.
0.3040.4Gma.7078.1.S1_atAt4g21580--3e-1At5g28660-O.I.H.G.S.X.
0.2228.1GmaAffx.62941.1.S1_atAt4g21580--4e-1At1g27740basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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