CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.953.2.A1_a_at

Gene name
Homology with Arabidopsis Similar to At4g21580: oxidoreductase, zinc-binding dehydrogenase family protein (HF=1e+0)

Module size 6 genes

NF 0.55

%ile 85.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 93.6 0.92 PtpAffx.953.2.A1_a_at CV276105 - - 1e+0 At4g21580 oxidoreductase, zinc-binding dehydrogenase family protein O.I. H.G. S.X.
0.71 92.6 0.90 PtpAffx.221583.1.S1_at pmrna38538 nbs-lrr resistance protein - 9e-1 At2g38790 unknown protein O.I. H.G. S.X.
0.61 87.0 0.93 PtpAffx.91700.2.S1_at CV273319 hypothetical protein - 1e-19 At4g38470 protein kinase family protein O.I. H.G. S.X.
0.44 71.9 0.93 PtpAffx.2522.1.A1_a_at M25337.1 hypothetical protein - 9e+0 At5g63070 40S ribosomal protein S15, putative O.I. H.G. S.X.
0.40 67.0 0.93 PtpAffx.205011.1.S1_at pmrna9914 hypothetical protein - 2e-3 At4g25310 oxidoreductase, 2OG-Fe(II) oxygenase family protein O.I. H.G. S.X.
0.22 38.3 0.95 PtpAffx.214538.1.S1_s_at pmrna28252 hypothetical protein - 5e+0 At3g62320 nucleic acid binding O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.4 99.4 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
7.2 98.1 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.4 97.0 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.1 96.8 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g21580, orthologous to the query gene, PtpAffx.953.2.A1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At4g21580 828243 oxidoreductase, zinc-binding dehydrogenase family protein F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOFMPA O.I. H.G. S.X.
0.55 70.6 At1g76150 843947 maoC-like dehydratase domain-containing protein Encodes a monofunctional enoyl-CoA hydratase 2, involved in the degradation of even cis-unsaturated fatty acids, gene expression is enhanced during the first 2 days of germination, as well as in senescent leaves. O.I. H.G. S.X.
0.50 65.3 At1g32790 840173 RNA-binding protein, putative RNA-binding protein, putative, similar to RNA-binding protein GB:CAB40027 GI:4539439 from (Arabidopsis thaliana).Member of a family of PAB2 binding domain proteins. O.I. H.G. S.X.
0.50 65.3 At5g59420 836061 ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C) F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOP O.I. H.G. S.X.
0.35 41.6 At2g01490 814677 phytanoyl-CoA dioxygenase (PhyH) family protein F:phytanoyl-CoA dioxygenase activity;P:N-terminal protein myristoylation;C:plasma membrane;OMBFP O.I. H.G. S.X.
0.27 26.2 At3g43230 823398 zinc finger (FYVE type) family protein F:phosphoinositide binding, zinc ion binding;P:signal transduction;C:cellular_component unknown;MFOPBV O.I. H.G. S.X.
0.07 1.9 At1g27000 839590 bZIP family transcription factor F:DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POBM O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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