Co-expression analysis

Gene ID	PtpAffx.9411.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g39550: PGGT-I (HF=5e-9)
Module size	8 genes
NF	0.61
%ile	90.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.95	PtpAffx.9411.1.A1_at	BP934185	hypothetical protein	-	5e-9	At2g39550	PGGT-I	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.75	94.1	0.96	Ptp.4391.2.A1_s_at	CV229557	hypothetical protein	-	3e-14	At1g32400	TOM2A (TOBAMOVIRUS MULTIPLICATION 2A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.96	PtpAffx.7924.1.S1_at	CV263522	hypothetical protein	-	8e-6	At5g62930	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.96	PtpAffx.144134.1.S1_at	CV241139	hypothetical protein	-	5e-17	At5g61240	protein binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.96	Ptp.4696.1.S1_s_at	CK089480	hypothetical protein	-	4e-11	At3g63460	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.96	PtpAffx.5277.2.A1_a_at	CV254923	hypothetical protein	-	2e-21	At1g16900	sugar binding / transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.9003.1.A1_s_at	CK091604	hypothetical protein	-	2e+0	At5g10000	ATFD4 (ferredoxin 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.96	PtpAffx.87139.1.A1_at	BP933283	hypothetical protein	-	9e-6	At1g35470	SPla/RYanodine receptor (SPRY) domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	95.5	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.1	88.6	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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