Co-expression analysis

Gene ID	PtpAffx.92745.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g73670: ATMPK15 (HF=4e-22)
Module size	6 genes
NF	0.35
%ile	61.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	80.5	0.89	PtpAffx.92745.1.S1_at	CK104111	hypothetical protein	-	4e-22	At1g73670	ATMPK15	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.90	PtpAffx.30445.2.S1_at	CV275763	hypothetical protein	-	2e-32	At3g18040	MPK9 (MAP KINASE 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.93	PtpAffx.30445.2.S1_a_at	CV275763	hypothetical protein	-	2e-32	At3g18040	MPK9 (MAP KINASE 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.89	PtpAffx.213932.1.S1_at	pmrna27162	hypothetical protein	-	5e-41	At3g47600	ATMYB94 (MYB DOMAIN PROTEIN 94)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.88	PtpAffx.152452.2.A1_a_at	CV269086	hypothetical protein	-	4e-1	At1g53903	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.90	PtpAffx.219737.1.S1_s_at	pmrna35759	hypothetical protein	-	4e-41	At3g09600	myb family transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	94.5	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1	93.2	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0	92.9	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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