Co-expression analysis

Gene ID	PtpAffx.92178.2.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g60680: unknown protein (HF=4e+0)
Module size	15 genes
NF	0.31
%ile	54.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.51	78.9	0.84	PtpAffx.92178.2.S1_s_at	CV271561	hypothetical protein	-	4e+0	At5g60680	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.89	PtpAffx.63346.1.A1_at	CV243969	-	-	2e-2	At1g10150	carbohydrate binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.88	PtpAffx.213421.1.S1_at	pmrna26246	hypothetical protein	-	1e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.87	PtpAffx.222702.1.S1_at	pmrna40280	hypothetical protein	-	2e+0	At3g53290	CYP71B30P	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.89	PtpAffx.218062.1.S1_s_at	pmrna33582	hypothetical protein	-	7e-1	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.90	PtpAffx.28818.1.S1_at	BU812529	-	-	4e+0	At4g14305	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.88	PtpAffx.215976.1.S1_at	pmrna30470	hypothetical protein	-	4e-25	At3g07330	ATCSLC6 (CELLULOSE-SYNTHASE LIKE C6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.90	PtpAffx.249.605.A1_at	CV276304	-	-	4e-4	At1g14900	HMGA (HIGH MOBILITY GROUP A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.89	PtpAffx.202836.1.S1_x_at	pmrna5621	hypothetical protein	-	4e+0	At5g40930	TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.88	PtpAffx.216338.1.S1_at	pmrna31052	hypothetical protein	-	2e+0	At5g05657	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.88	PtpAffx.20441.1.A1_at	CV232484	-	-	2e-1	At5g22040	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.88	PtpAffx.212630.1.S1_s_at	pmrna24725	hypothetical protein	-	2e-2	At5g61930	APO3 (ACCUMULATION OF PHOTOSYSTEM ONE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.90	PtpAffx.208855.1.S1_at	pmrna17554	hypothetical protein	-	2e-1	At1g80910	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.88	PtpAffx.139528.2.A1_at	CV228130	-	-	4e-10	At3g08570	protein binding / signal transducer	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.89	PtpAffx.219343.1.S1_at	pmrna35232	hypothetical protein	-	2e-8	At2g39580	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	97.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3	93.7	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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