Co-expression analysis

Gene ID	PtpAffx.92049.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g54570: BGLU41 (BETA GLUCOSIDASE 41) (HF=3e-7)
Module size	6 genes
NF	0.63
%ile	92.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.83	PtpAffx.92049.1.S1_s_at	DN494710	hypothetical protein	-	3e-7	At5g54570	BGLU41 (BETA GLUCOSIDASE 41)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.86	PtpAffx.200540.1.S1_s_at	pmrna1075	hypothetical protein	-	2e-6	At5g54570	BGLU41 (BETA GLUCOSIDASE 41)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.84	PtpAffx.200541.1.S1_s_at	pmrna1076	hypothetical protein	-	3e-1	At4g17170	RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.84	PtpAffx.208897.1.S1_at	pmrna17648	hypothetical protein	-	1e+0	At4g35360	pantothenate kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.84	PtpAffx.67985.1.S1_at	BP933020	-	-	8e-1	At2g21810	CHP-rich zinc finger protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.87	PtpAffx.22767.1.S1_a_at	DN487906	hypothetical protein	-	8e+0	At5g27940	WPP3 (WPP domain protein 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	97.6	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8	86.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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