Co-expression analysis

Gene ID	PtpAffx.91700.2.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g38470: protein kinase family protein (HF=1e-19)
Module size	17 genes
NF	0.79
%ile	98.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.90	PtpAffx.91700.2.S1_at	CV273319	hypothetical protein	-	1e-19	At4g38470	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.90	97.9	0.96	PtpAffx.18976.1.A1_at	CV226921	hypothetical protein	-	1e+1	At5g20160	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.88	97.7	0.96	PtpAffx.24159.1.A1_at	CA923426	hypothetical protein	-	9e-3	At1g70410	carbonic anhydrase, putative / carbonate dehydratase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.88	97.7	0.96	PtpAffx.24159.1.A1_x_at	CA923426	hypothetical protein	-	9e-3	At1g70410	carbonic anhydrase, putative / carbonate dehydratase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.87	97.5	0.97	PtpAffx.128798.1.S1_at	CN520667	hypothetical protein	-	2e-15	At5g41080	glycerophosphoryl diester phosphodiesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.85	97.2	0.95	PtpAffx.6273.1.S1_at	CV264184	-	-	1e+1	At5g05910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.85	97.2	0.96	PtpAffx.210801.1.S1_at	pmrna21209	hypothetical protein	-	4e+0	At5g05770	WOX7 (WUSCHEL-RELATED HOMEOBOX 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.85	97.2	0.97	PtpAffx.210801.1.S1_x_at	pmrna21209	hypothetical protein	-	4e+0	At5g05770	WOX7 (WUSCHEL-RELATED HOMEOBOX 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.96	PtpAffx.2386.3.S1_at	CV274142	hypothetical protein	-	2e+0	At4g03150	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.96	PtpAffx.25648.2.A1_at	CV230643	hypothetical protein	-	6e-14	At4g02280	SUS3 (sucrose synthase 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.75	94.1	0.96	PtpAffx.203638.1.S1_at	pmrna7218	hypothetical protein	-	3e-8	At5g19870	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.74	93.8	0.94	PtpAffx.127432.1.A1_at	CV257984	hypothetical protein	-	4e-4	At1g68725	AGP19 (ARABINOGALACTAN-PROTEIN 19)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.72	92.7	0.95	PtpAffx.88270.1.A1_at	CV274076	-	-	1e-1	At1g08080	ACA7 (ALPHA CARBONIC ANHYDRASE 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.98	PtpAffx.222219.1.S1_at	pmrna39489	-	-	5e-3	At3g22020	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.69	91.5	0.95	PtpAffx.152340.1.S1_at	CN522546	hypothetical protein	-	1e-41	At5g07440	GDH2 (GLUTAMATE DEHYDROGENASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	PtpAffx.202990.1.S1_at	pmrna5917	hypothetical protein	-	6e-4	At1g53940	GLIP2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.97	PtpAffx.126213.1.S1_s_at	CV274136	-	-	5e+0	At5g56120	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.5	99.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
8.3	98.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.1	96.8	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6	84.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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