Co-expression analysis

Gene ID PtpAffx.9156.4.S1_a_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g10970: unknown protein (HF=2e-2)
Module size 18 genes
NF 0.04
%ile 9.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8697.40.83PtpAffx.9156.4.S1_a_atDN487138hypothetical protein-2e-2At4g10970unknown proteinO.I.H.G.S.X.
0.2034.60.91Ptp.3423.1.S1_atDN493212hypothetical protein-5e-1At3g14560unknown proteinO.I.H.G.S.X.
0.1830.80.89Ptp.3300.2.S1_atDN494979--3e+0At1g01670U-box domain-containing proteinO.I.H.G.S.X.
0.1729.10.94PtpAffx.60700.1.S1_atCK104030hypothetical protein-1e+0At2g14160nucleic acid binding / nucleotide bindingO.I.H.G.S.X.
0.1729.10.92PtpAffx.142582.1.A1_atCK090941hypothetical protein-2e-3At4g03260leucine-rich repeat family proteinO.I.H.G.S.X.
0.1525.30.93Ptp.352.1.S1_atCV237616hypothetical protein-2e-30At1g63770peptidase M1 family proteinO.I.H.G.S.X.
0.1118.10.93PtpAffx.8674.3.S1_atCK096938hypothetical protein-8e-8At2g33510protein bindingO.I.H.G.S.X.
0.1016.30.88PtpAffx.209824.1.S1_s_atpmrna19368hypothetical protein-7e-26At5g55060unknown proteinO.I.H.G.S.X.
0.1016.30.92PtpAffx.10596.1.A1_atCX183015--2e+0At5g4770060S acidic ribosomal protein P1 (RPP1C)O.I.H.G.S.X.
0.0711.60.90PtpAffx.2216.1.S1_atCV266240hypothetical protein-5e-13At4g21310unknown proteinO.I.H.G.S.X.
0.0711.60.90PtpAffx.212076.1.S1_atpmrna23700hypothetical protein-6e-64At4g08180ORP1C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C)O.I.H.G.S.X.
0.069.80.87PtpAffx.221407.1.S1_atpmrna38282hypothetical protein-4e-1At1g75190unknown proteinO.I.H.G.S.X.
0.069.80.93Ptp.5968.1.A1_atCX654912hypothetical protein-3e-20At1g08530unknown proteinO.I.H.G.S.X.
0.046.90.85PtpAffx.38981.2.S1_a_atDN485452--4e-1At4g19150ankyrin repeat family proteinO.I.H.G.S.X.
0.046.90.86Ptp.4671.1.S1_atCK102955--1e+0At3g25070RIN4 (RPM1 INTERACTING PROTEIN 4)O.I.H.G.S.X.
0.035.20.86PtpAffx.18193.1.A1_atCV257702--1e+0At2g36220unknown proteinO.I.H.G.S.X.
0.012.20.86Ptp.4279.1.S1_atDN489672transcription factor E2F-4e-8At2g36010E2F3 (E2F TRANSCRIPTION FACTOR 3)O.I.H.G.S.X.
0.012.20.87PtpAffx.84458.1.A1_atCV254200hypothetical protein-7e-15At5g20590unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.697.2GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.095.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.684.5GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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