Co-expression analysis

Gene ID	PtpAffx.903.2.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g04290: thioesterase family protein (HF=8e-6)
Module size	7 genes
NF	0.10
%ile	20.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	0.91	PtpAffx.903.2.S1_a_at	DN487155	hypothetical protein	-	8e-6	At1g04290	thioesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.92	PtpAffx.23748.1.S1_at	CV276624	-	-	5e-1	At3g20870	metal transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.92	PtpAffx.217633.1.S1_s_at	pmrna32979	SET domain protein	-	5e-144	At5g14260	SET domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.93	PtpAffx.221294.1.S1_at	pmrna38076	hypothetical protein	-	9e-14	At4g09620	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.92	PtpAffx.27835.1.S1_at	CV279344	hypothetical protein	-	3e-21	At3g09050	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.91	Ptp.6968.1.A1_at	CV233808	hypothetical protein	-	2e-12	At3g16620	ATTOC120	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.92	PtpAffx.204125.1.S1_at	pmrna8136	hypothetical protein	-	6e-7	At5g39210	CRR7 (CHLORORESPIRATORY REDUCTION 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.2	99.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.8	97.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage