Co-expression analysis

Gene ID PtpAffx.89457.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g78955: CAMS1 (Camelliol C synthase 1) (HF=5e-22)
Module size 6 genes
NF 0.42
%ile 70.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6086.00.93PtpAffx.89457.1.A1_atDN492169hypothetical protein-5e-22At1g78955CAMS1 (Camelliol C synthase 1)O.I.H.G.S.X.
0.5984.90.93PtpAffx.206496.1.S1_atpmrna12888hypothetical protein-5e-33At4g02050sugar transporter, putativeO.I.H.G.S.X.
0.5078.60.95PtpAffx.18236.1.S1_atCV272788hypothetical protein-1e-10At1g09645unknown proteinO.I.H.G.S.X.
0.3357.50.94PtpAffx.33074.1.S1_atCK091989hypothetical protein-6e-65At5g42000ORMDL family proteinO.I.H.G.S.X.
0.3052.00.93PtpAffx.23406.1.S1_atCK091295hypothetical protein-7e-1At1g70960F-box family proteinO.I.H.G.S.X.
0.2747.10.95PtpAffx.3546.1.A1_atCV241865hypothetical protein-3e-33At5g10730binding / catalytic/ coenzyme bindingO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5582.20.92Ptp.6210.1.S1_atCV267239--1e-11At2g38740haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.4673.70.89PtpAffx.13744.2.S1_atBU810149--1e-22At3g13320CAX2 (CATION EXCHANGER 2)O.I.H.G.S.X.
0.4471.90.91PtpAffx.59020.1.A1_atCV244118hypothetical protein-1e-3At1g62045-O.I.H.G.S.X.
0.4471.90.92PtpAffx.39365.1.S1_atCK095595hypothetical protein-2e+0At5g64750ABR1 (ABA REPRESSOR1)O.I.H.G.S.X.
0.4268.60.92PtpAffx.7814.2.A1_atCV281562hypothetical protein-7e-12At5g47180vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.4067.00.92Ptp.2135.1.A1_atCV280878hypothetical protein-2e-9At3g25030zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3559.70.92PtpAffx.14950.1.S1_atCV259301hypothetical protein-1e+0At3g12760-O.I.H.G.S.X.
0.3559.70.94PtpAffx.223426.1.S1_atpmrna41429mitochondrial phosphate carrier protein-2e-74At5g14040mitochondrial phosphate transporterO.I.H.G.S.X.
0.3559.70.92PtpAffx.43659.1.A1_atCV263005hypothetical protein-4e+0At5g51640YLS7O.I.H.G.S.X.
0.3357.50.90PtpAffx.221519.1.S1_atpmrna38446nucleosome/chromatin assembly factor group-2e-54At2g19520FVEO.I.H.G.S.X.
0.3357.50.92PtpAffx.208619.1.S1_atpmrna17112acyl:coa ligase-2e-1At1g204804-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinO.I.H.G.S.X.
0.3153.70.88PtpAffx.8382.1.A1_atCV269254hypothetical protein-9e-7At1g54460-O.I.H.G.S.X.
0.3153.70.91PtpAffx.49484.1.A1_s_atCV231831hypothetical protein-3e-5At3g51770ETO1 (ETHYLENE OVERPRODUCER 1)O.I.H.G.S.X.
0.2950.50.92PtpAffx.136012.1.A1_s_atCV269634hypothetical protein-3e-1At3g56080dehydration-responsive protein-relatedO.I.H.G.S.X.
0.2950.50.92Ptp.911.1.S1_atCK089385hypothetical protein-4e-2At4g19700RINGO.I.H.G.S.X.
0.2850.50.88PtpAffx.207247.1.S1_atpmrna14363hypothetical protein-4e-95At4g35650isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putativeO.I.H.G.S.X.
0.2543.60.87Ptp.3587.1.A1_atCV225631hypothetical protein-8e-12At5g22980scpl47 (serine carboxypeptidase-like 47)O.I.H.G.S.X.
0.2543.60.90PtpAffx.213040.1.S1_atpmrna25521hypothetical protein-3e-2At1g07430protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.2543.60.90PtpAffx.160223.2.A1_atCK096789hypothetical protein-5e-7At3g30775ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5)O.I.H.G.S.X.
0.2543.60.93PtpAffx.142714.1.S1_atCX658989hypothetical protein-8e-6At3g11950prenyltransferase/ zinc ion bindingO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.096.6GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.295.6GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.892.1GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.791.8GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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