Co-expression analysis

Gene ID PtpAffx.89457.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g78955: CAMS1 (Camelliol C synthase 1) (HF=5e-22)
Module size 6 genes
NF 0.42
%ile 70.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6086.00.93PtpAffx.89457.1.A1_atDN492169hypothetical protein-5e-22At1g78955CAMS1 (Camelliol C synthase 1)O.I.H.G.S.X.
0.5984.90.93PtpAffx.206496.1.S1_atpmrna12888hypothetical protein-5e-33At4g02050sugar transporter, putativeO.I.H.G.S.X.
0.5078.60.95PtpAffx.18236.1.S1_atCV272788hypothetical protein-1e-10At1g09645unknown proteinO.I.H.G.S.X.
0.3357.50.94PtpAffx.33074.1.S1_atCK091989hypothetical protein-6e-65At5g42000ORMDL family proteinO.I.H.G.S.X.
0.3052.00.93PtpAffx.23406.1.S1_atCK091295hypothetical protein-7e-1At1g70960F-box family proteinO.I.H.G.S.X.
0.2747.10.95PtpAffx.3546.1.A1_atCV241865hypothetical protein-3e-33At5g10730binding / catalytic/ coenzyme bindingO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.096.6GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.295.6GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.892.1GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.791.8GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os02g0139700, orthologous to the query gene, PtpAffx.89457.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4458.1Os02g0139700At1g78955-Cycloartenol synthase (EC 5.4.99.8)2e-24At2g07050CAS1 (cycloartenol synthase 1)O.I.H.G.S.X.
0.2219.4Os06g0184300At1g78955-Peptidase C19, ubiquitin carboxyl-terminalhydrolase 2 family protein6e-15At5g57990UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23)O.I.H.G.S.X.
0.1611.3Os05g0482600At1g78955-WD40-like domain containing protein3e-28At3g54190-O.I.H.G.S.X.
0.094.9Os01g0683100At1g78955-35570-33019 (AAA1) (Katanin 1)9e-66At1g80350ERH3 (ECTOPIC ROOT HAIR 3)O.I.H.G.S.X.
0.042.0Os11g0199600At1g78955-Zn-finger, CCHC type domain containing protein7e-1At5g61890AP2 domain-containing transcription factor family proteinO.I.H.G.S.X.
0.042.0Os01g0150200At1g78955-Protein tyrosine phosphatase-like protein, PTPLAfamily protein2e-13At5g10480PAS2 (PASTICCINO 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays



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