Co-expression analysis

Gene ID PtpAffx.89457.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g78955: CAMS1 (Camelliol C synthase 1) (HF=5e-22)
Module size 6 genes
NF 0.42
%ile 70.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6086.00.93PtpAffx.89457.1.A1_atDN492169hypothetical protein-5e-22At1g78955CAMS1 (Camelliol C synthase 1)O.I.H.G.S.X.
0.5984.90.93PtpAffx.206496.1.S1_atpmrna12888hypothetical protein-5e-33At4g02050sugar transporter, putativeO.I.H.G.S.X.
0.5078.60.95PtpAffx.18236.1.S1_atCV272788hypothetical protein-1e-10At1g09645unknown proteinO.I.H.G.S.X.
0.3357.50.94PtpAffx.33074.1.S1_atCK091989hypothetical protein-6e-65At5g42000ORMDL family proteinO.I.H.G.S.X.
0.3052.00.93PtpAffx.23406.1.S1_atCK091295hypothetical protein-7e-1At1g70960F-box family proteinO.I.H.G.S.X.
0.2747.10.95PtpAffx.3546.1.A1_atCV241865hypothetical protein-3e-33At5g10730binding / catalytic/ coenzyme bindingO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.096.6GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.295.6GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.892.1GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.791.8GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

A co-expression module including the barley gene, HY04M24u_s_at, orthologous to the query gene, PtpAffx.89457.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8795.0HY04M24u_s_atAt1g78955--1e-2At1g54217Expressed proteinO.I.H.G.S.X.
0.4356.4HZ49P22r_s_atAt1g78955--9e-1At5g42825unknown proteinO.I.H.G.S.X.
0.4255.2HVSMEl0020O13r2_s_atAt1g78955--9e+0At5g17150-O.I.H.G.S.X.
0.3747.9HV_CEa0008A14r2_s_atAt1g78955--2e+0At3g46060ATRAB8AO.I.H.G.S.X.
0.3647.1Contig376_s_atAt1g78955--5e+0At1g28135unknown proteinO.I.H.G.S.X.
0.3545.1Contig22861_atAt1g78955--7e+0At3g59880unknown proteinO.I.H.G.S.X.
0.2935.5Contig3884_atAt1g78955--1e+0At1g69880ATH8 (thioredoxin H-type 8)O.I.H.G.S.X.
0.2935.5Contig2669_atAt1g78955--8e-13At4g25820XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)O.I.H.G.S.X.
0.2630.4Contig6422_atAt1g78955--3e-1At2g34900IMB1 (IMBIBITION-INDUCIBLE 1)O.I.H.G.S.X.
0.2630.4HK06B02r_s_atAt1g78955--1e-5At3g43810CAM7 (CALMODULIN 7)O.I.H.G.S.X.
0.2630.4HT07O19u_s_atAt1g78955--2e+0At4g27960UBC9 (UBIQUITIN CONJUGATING ENZYME 9)O.I.H.G.S.X.
0.2528.9Contig4072_atAt1g78955--2e+0At2g3161040S ribosomal protein S3 (RPS3A)O.I.H.G.S.X.
0.2528.9Contig7570_atAt1g78955--1e-7At1g06960small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeO.I.H.G.S.X.
0.2326.1EBem05_SQ001_F02_atAt1g78955--8e+0At5g17240SDG40 (SET DOMAIN GROUP 40)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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