Co-expression analysis

Gene ID PtpAffx.89457.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g78955: CAMS1 (Camelliol C synthase 1) (HF=5e-22)
Module size 6 genes
NF 0.42
%ile 70.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6086.00.93PtpAffx.89457.1.A1_atDN492169hypothetical protein-5e-22At1g78955CAMS1 (Camelliol C synthase 1)O.I.H.G.S.X.
0.5984.90.93PtpAffx.206496.1.S1_atpmrna12888hypothetical protein-5e-33At4g02050sugar transporter, putativeO.I.H.G.S.X.
0.5078.60.95PtpAffx.18236.1.S1_atCV272788hypothetical protein-1e-10At1g09645unknown proteinO.I.H.G.S.X.
0.3357.50.94PtpAffx.33074.1.S1_atCK091989hypothetical protein-6e-65At5g42000ORMDL family proteinO.I.H.G.S.X.
0.3052.00.93PtpAffx.23406.1.S1_atCK091295hypothetical protein-7e-1At1g70960F-box family proteinO.I.H.G.S.X.
0.2747.10.95PtpAffx.3546.1.A1_atCV241865hypothetical protein-3e-33At5g10730binding / catalytic/ coenzyme bindingO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.096.6GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.295.6GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.892.1GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.791.8GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.9275.1.S1_at, orthologous to the query gene, PtpAffx.89457.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4968.3GmaAffx.9275.1.S1_atAt1g78955--6e-5At1g78970LUP1 (LUPEOL SYNTHASE 1)O.I.H.G.S.X.
0.4463.3Gma.13164.1.S1_a_atAt1g78955--3e-12At5g03880electron carrierO.I.H.G.S.X.
0.4463.3Gma.10458.3.S1_a_atAt1g78955--6e+0At5g24640unknown proteinO.I.H.G.S.X.
0.4259.3GmaAffx.85726.1.S1_atAt1g78955--8e-1At5g02060integral membrane protein, putativeO.I.H.G.S.X.
0.4259.3GmaAffx.69506.1.S1_atAt1g78955--1e-31At2g18710SCY1 (SecY Homolog 1)O.I.H.G.S.X.
0.3650.8GmaAffx.74040.1.S1_atAt1g78955--3e-25At4g36530hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.3243.7GmaAffx.26359.1.S1_atAt1g78955--6e-40At5g59250sugar transporter family proteinO.I.H.G.S.X.
0.2939.0GmaAffx.73345.1.S1_s_atAt1g78955--2e-1At4g13320unknown proteinO.I.H.G.S.X.
0.2939.0GmaAffx.77189.1.S1_atAt1g78955--1e-31At1g54350ABC transporter family proteinO.I.H.G.S.X.
0.2228.1Gma.3556.1.S1_atAt1g78955--5e-17At4g23430short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.069.0GmaAffx.13903.1.S1_atAt1g78955--3e-9At2g35490plastid-lipid associated protein PAP, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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