Co-expression analysis

Gene ID PtpAffx.89036.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g45740: PEX11D (HF=4e+0)
Module size 17 genes
NF 0.25
%ile 45.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8697.40.78PtpAffx.89036.1.A1_atCV241245--4e+0At2g45740PEX11DO.I.H.G.S.X.
0.4067.00.90PtpAffx.1025.2.A1_x_atCV228295vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine-1e-153At5g17920ATMS1O.I.H.G.S.X.
0.4067.00.91PtpAffx.210785.1.S1_atpmrna21161potassium efflux antiporter-6e-135At5g51710KEA5O.I.H.G.S.X.
0.4067.00.91PtpAffx.205064.1.S1_atpmrna10030hypothetical protein-3e-23At2g27990BLH8 (BEL1-LIKE HOMEODOMAIN 8)O.I.H.G.S.X.
0.3559.70.91PtpAffx.3761.1.A1_x_atM73430.1--4e-120At1g02500SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1)O.I.H.G.S.X.
0.2850.50.93PtpAffx.40711.1.A1_a_atDN496741hypothetical protein-3e-4At1g53040unknown proteinO.I.H.G.S.X.
0.2645.20.93PtpAffx.34708.3.S1_s_atCF237092hypothetical protein-4e+0At2g16620protein kinase-relatedO.I.H.G.S.X.
0.2441.80.91PtpAffx.25163.1.A1_atBP932897hypothetical protein-2e-10At3g62660GATL7 (Galacturonosyltransferase-like 7)O.I.H.G.S.X.
0.2441.80.90PtpAffx.101445.1.S1_atCV264873global transcription factor group /// hypothetical protein-1e-4At5g10550GTE2 (Global transcription factor group E 2)O.I.H.G.S.X.
0.2340.50.92PtpAffx.38086.1.A1_s_atCV226853hypothetical protein-2e-1At1g24120ARL1 (ARG1-LIKE 1)O.I.H.G.S.X.
0.2340.50.93Ptp.4715.1.A1_a_atCV248806hypothetical protein-9e-6At5g57320villin, putativeO.I.H.G.S.X.
0.2136.50.93PtpAffx.89430.1.A1_s_atCV226302hypothetical protein-4e-7At1g54320LEM3 (ligand-effect modulator 3) family protein / CDC50 family proteinO.I.H.G.S.X.
0.2034.60.92Ptp.5410.1.S1_atCV249787hypothetical protein-2e-9At5g16450dimethylmenaquinone methyltransferase family proteinO.I.H.G.S.X.
0.1626.90.89PtpAffx.24359.1.A1_atCV263210hypothetical protein-1e-1At3g21830ASK8 (ARABIDOPSIS SKP1-LIKE 8)O.I.H.G.S.X.
0.1626.90.81PtpAffx.28961.1.S1_atDN485072hypothetical protein-6e-1At2g17500auxin efflux carrier family proteinO.I.H.G.S.X.
0.1423.50.91PtpAffx.205884.1.S1_atpmrna11665hypothetical protein-1e-19At1g20780SAUL1 (SENESCENCE-ASSOCIATED E3 UBIQUITIN LIGASE 1)O.I.H.G.S.X.
0.1016.30.90PtpAffx.130540.1.S1_atCN550293hypothetical protein-3e+0At3g33187-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.691.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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