Co-expression analysis

Gene ID	PtpAffx.8857.3.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g40660: ATP12 protein-related (HF=3e-1)
Module size	6 genes
NF	0.26
%ile	47.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.95	PtpAffx.8857.3.S1_at	BP928835	hypothetical protein	-	3e-1	At5g40660	ATP12 protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.95	PtpAffx.58004.1.S1_at	CX183756	-	-	9e-11	At3g14100	oligouridylate-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.95	PtpAffx.12848.1.S1_at	DN484571	hypothetical protein	-	3e-11	At2g37410	ATTIM17-2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.95	PtpAffx.159025.1.A1_s_at	CX173614	hypothetical protein	-	5e-112	At2g26140	ftsh4 (FtsH protease 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.95	PtpAffx.200043.1.S1_at	pmrna74	hypothetical protein	-	1e-89	At3g58570	DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.95	PtpAffx.2152.2.S1_a_at	CA826185	hypothetical protein	-	2e-5	At3g13410	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	92.1	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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