Co-expression analysis

Gene ID PtpAffx.8810.1.S1_at
Gene name AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor
Homology with ArabidopsisSimilar to At1g21910: AP2 domain-containing transcription factor family protein (HF=2e-34)
Module size 6 genes
NF 0.76
%ile 98.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.96PtpAffx.8810.1.S1_atCK096534AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor-2e-34At1g21910AP2 domain-containing transcription factor family proteinO.I.H.G.S.X.
0.8397.00.95PtpAffx.30602.1.A1_atCV268363hypothetical protein-1e-4At5g17800AtMYB56 (myb domain protein 56)O.I.H.G.S.X.
0.7393.60.95PtpAffx.119343.1.A1_a_atBP933189hypothetical protein-4e-10At5g12010unknown proteinO.I.H.G.S.X.
0.6791.10.95PtpAffx.106356.1.S1_atCX660277AP2/ERF domain-containing transcription factor-5e+0At3g15050IQD10 (IQ-domain 10)O.I.H.G.S.X.
0.6388.10.95Ptp.3396.1.S1_atDN485474hypothetical protein-1e-5At3g50310MAPKKK20O.I.H.G.S.X.
0.5683.90.95Ptp.3396.1.S1_s_atDN485474hypothetical protein-1e-5At3g50310MAPKKK20O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.498.6GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
6.797.9GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.396.9GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.696.2GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.794.7GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.092.9GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage