Co-expression analysis

Gene ID	PtpAffx.87993.1.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g08900: arginase (HF=2e-90)
Module size	7 genes
NF	0.35
%ile	61.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.94	PtpAffx.87993.1.S1_a_at	CV255326	hypothetical protein	-	2e-90	At4g08900	arginase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	PtpAffx.215079.1.S1_x_at	pmrna29044	hypothetical protein	-	4e-78	At3g23660	transport protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.5311.1.S1_at	CV253617	hypothetical protein	-	7e-31	At2g18600	RUB1-conjugating enzyme, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	Ptp.2166.1.S1_s_at	CV244136	hypothetical protein	-	5e-54	At5g13430	ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.96	Ptp.2962.1.A1_a_at	CV262692	hypothetical protein	-	8e-16	At5g19070	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.95	PtpAffx.37714.2.A1_a_at	CV258505	hypothetical protein	-	1e-7	At5g01010	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.95	PtpAffx.207693.1.S1_at	pmrna15267	hypothetical protein	-	4e-79	At3g46060	ATRAB8A	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	97.7	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.3	96.9	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0	92.9	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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