Co-expression analysis

Gene ID	PtpAffx.87978.1.S1_s_at
Gene name	leucine-rich repeat protein kinase
Homology with Arabidopsis	Similar to At5g62230: ERL1 (ERECTA-LIKE 1) (HF=1e-38)
Module size	7 genes
NF	0.67
%ile	94.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.90	PtpAffx.87978.1.S1_s_at	CX170242	leucine-rich repeat protein kinase	-	1e-38	At5g62230	ERL1 (ERECTA-LIKE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.90	PtpAffx.216790.1.S1_s_at	pmrna31796	hypothetical protein	-	9e-1	At5g47470	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.75	94.1	0.89	Ptp.7099.1.S1_s_at	BU810141	hypothetical protein	-	4e+0	At5g40430	MYB22 (myb domain protein 22)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.91	PtpAffx.64701.1.S1_x_at	CV236236	histone 2	-	3e-45	At2g38810	HTA8 (HISTONE H2A 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.90	PtpAffx.29085.1.A1_s_at	DN489411	-	-	4e+0	At1g75700	HVA22G (HVA22-LIKE PROTEIN G)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.91	PtpAffx.64701.2.S1_at	CX184746	histone 2	-	6e-12	At3g54560	HTA11	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.95	PtpAffx.202524.1.S1_s_at	pmrna5051	hypothetical protein	-	6e-1	At1g13700	glucosamine/galactosamine-6-phosphate isomerase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.8	99.1	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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