Co-expression analysis

Gene ID	PtpAffx.87019.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g19390: pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein (HF=9e-14)
Module size	10 genes
NF	0.47
%ile	76.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.51	78.9	0.92	PtpAffx.87019.1.A1_at	BP935009	hypothetical protein	-	9e-14	At5g19390	pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	PtpAffx.135582.1.A1_at	CV271788	hypothetical protein	-	2e+0	At1g76630	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.94	PtpAffx.7536.3.A1_at	CV227608	-	-	5e+0	At5g35526	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.95	PtpAffx.20182.2.S1_at	CV261841	-	-	6e-3	At3g06660	PAPA-1-like family protein / zinc finger (HIT type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.94	PtpAffx.54182.1.A1_at	CV249623	-	-	4e-16	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.94	Ptp.5410.1.S1_at	CV249787	hypothetical protein	-	2e-9	At5g16450	dimethylmenaquinone methyltransferase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	PtpAffx.19715.1.A1_at	CV263893	hypothetical protein	-	7e-10	At2g20230	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.93	PtpAffx.196.1.S1_at	CV228371	hypothetical protein	-	1e-91	At1g79230	MST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.94	PtpAffx.56124.1.A1_at	CV277086	SET domain protein /// SET domain protein	-	4e-38	At1g05830	ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.94	Ptp.1608.1.A1_at	CV229340	hypothetical protein	-	9e-16	At2g46920	POL (poltergeist)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.2	97.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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