Co-expression analysis

Gene ID	PtpAffx.8652.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g78900: VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) (HF=0)
Module size	6 genes
NF	0.51
%ile	82.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	0.91	PtpAffx.8652.1.S1_at	CV234413	-	-	0	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.89	PtpAffx.249.3.S1_x_at	AY594299.1	-	-	2e-11	At3g15353	MT3 (METALLOTHIONEIN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.90	PtpAffx.249.350.A1_at	BU876410	-	-	2e-10	At3g05880	RCI2A (RARE-COLD-INDUCIBLE 2A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.91	PtpAffx.11401.5.A1_at	CV280789	hypothetical protein	-	2e+0	At1g59590	ZCF37	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.92	PtpAffx.222686.1.S1_at	pmrna40247	hypothetical protein	-	1e-20	At3g04610	FLK (flowering locus KH domain)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.92	PtpAffx.201261.1.S1_at	pmrna2498	hypothetical protein	-	7e-14	At1g04950	TAF6 (TBP-ASSOCIATED FACTOR 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	94.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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