Co-expression analysis

Gene ID PtpAffx.86482.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g43810: small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative (HF=5e+0)
Module size 6 genes
NF 0.04
%ile 8.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.77PtpAffx.86482.1.S1_atDN492474--5e+0At2g43810small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putativeO.I.H.G.S.X.
0.0914.60.93PtpAffx.11716.4.A1_a_atBU895513hypothetical protein-2e+0At1g30970SUF4 (suppressor of FRIGIDA4)O.I.H.G.S.X.
0.046.90.88PtpAffx.73867.1.S1_atCK089227hypothetical protein-1e-1At3g50690leucine-rich repeat family proteinO.I.H.G.S.X.
0.035.20.94Ptp.4916.1.S1_s_atCV270159hypothetical protein-6e-165At5g26751ATSK11O.I.H.G.S.X.
0.023.60.90PtpAffx.107865.1.S1_atCV263032hypothetical protein-2e-24At5g47820FRA1 (FRAGILE FIBER 1)O.I.H.G.S.X.
0.012.20.93PtpAffx.63411.1.S1_atCV241876hypothetical protein-9e-1At5g11560catalyticO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.098.4GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
5.797.3GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.596.1GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.494.0GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.785.5GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.785.5GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.684.5GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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