Co-expression analysis

Gene ID PtpAffx.8582.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g19310: zinc finger (C3HC4-type RING finger) family protein (HF=2e-1)
Module size 6 genes
NF 0.53
%ile 83.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7192.60.90PtpAffx.8582.1.S1_atCV262556--2e-1At1g19310zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.8096.00.92PtpAffx.219974.1.S1_atpmrna36177hypothetical protein-2e-3At2g45040matrix metalloproteinaseO.I.H.G.S.X.
0.5078.60.91PtpAffx.210555.1.S1_atpmrna20709hypothetical protein-4e-16At1g23870ATTPS9O.I.H.G.S.X.
0.4067.00.89PtpAffx.213042.1.S1_atpmrna25523hypothetical protein-7e-15At5g51780basix helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.4067.00.92PtpAffx.95587.1.A1_atCV240701hypothetical protein-1e+0At5g53280PDV1 (PLASTID DIVISION1)O.I.H.G.S.X.
0.2340.50.91PtpAffx.25308.1.S1_x_atCN550378--4e+0At5g20970heat shock family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.998.4GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
6.898.0GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
6.297.6GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.696.2GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.495.9GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.389.8GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage